| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3323 |
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| Symbol | ppdC |
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| ID | 6872184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 3203846 |
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| End bp | 3204166 |
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| Gene Length | 321 bp |
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| Protein Length | 106 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642786330 |
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| Product | hypothetical protein |
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| Protein accession | YP_002216969 |
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| Protein GI | 198243918 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.0403449 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGCATC CCCTGAATTT ACAACGCGGG TTTAGCCTCC CGGAAGTTTT AGTGGCGATG
GTTCTAATGG TAATGATCGT CACCGCGCTG TCAGGCTATC AGCGGGTATT AATGCACAGT
TTTGCATTAC GACACCAGTA TCTTCAGATC TGGCGGCAGG CGTGGCAGCA AACGGCGCTG
TATCCATTTT CGCCTGCTGA AGGCTGGAAG GCCAACCGGA TGCAGACAAC GCAATCGGGA
TGTGTCAGCA TCAGCGTCAC GATGGTTTCA CCCTCTGGCA GGCAGGGGCA GATGACGCGC
TTGCATTGTC CAAATCGTTA A
|
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| Protein sequence | MSHPLNLQRG FSLPEVLVAM VLMVMIVTAL SGYQRVLMHS FALRHQYLQI WRQAWQQTAL
YPFSPAEGWK ANRMQTTQSG CVSISVTMVS PSGRQGQMTR LHCPNR
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