| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3270 |
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| Symbol | |
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| ID | 6871758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 3144219 |
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| End bp | 3146864 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642786283 |
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| Product | fimbrial usher protein |
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| Protein accession | YP_002216924 |
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| Protein GI | 198246073 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.142463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 0.0139544 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCTAA GCCTCTCCCC TTATAGCGCG TCAGGCAAAG ACATCGAATT TAATACCGAT
TTCCTCGATG TAAAAAATCG CGATAACGTT AACATTGCAC AGTTTTCTCG TAAGGGTTTT
ATTCTGCCAG GCGTCTACCT TTTACAAATT AAAATTAACG GACAGACTCT GCCGCAGGAA
TTTCCTGTTA ACTGGGTTAT TCCAGAACAT GATCCACAAG GAAGTGAGGT TTGCGCAGAA
CCAGAATTAG TTACGCAATT GGGTATAAAG CCGGAACTCG CGGAAAAACT CGTCTGGATA
ACGCACGGTG AACGACAATG TCTGGCGCCA GATTCACTGA AAGGCATGGA TTTTCAGGCT
GACCTGGGAC ACTCCACGCT GCTGGTGAAT TTACCCCAGG CGTATATGGA ATACAGCGAT
GTCGACTGGG ACCCGCCCGC CCGCTGGGAT AATGGTATTC CCGGCATCAT TCTGGATTAC
AACATTAATA ATCAGCTCCG CCACGATCAA GAAAGCGGCA GCGAAGAGCA AAGCATCAGC
GGCAACGGGA CGTTAGGCGC GAACCTGGGC GCATGGCGAC TGCGGGCCGA CTGGCAGGCC
AGCTACGACC ATCGTGACGA TGACGAGAAC ACTTCCACCC TCCACGATCA GAGCTGGAGC
CGCTACTACG CCTATCGCGC ACTACCGACG CTCGGGGCCA AACTTACGCT GGGCGAAAGC
TATCTCCAGT CCGATGTTTT CGACAGCTTT AACTATATCG GTGCCAGCGT CGTTTCTGAC
GATCAGATGC TGCCGCCGAA ACTGCGCGGC TATGCGCCGG AGATCGTGGG CATTGCGCGC
TCTAATGCCA AAGTCAAAGT CTCCTGGCAG GGGCGCGTAC TGTATGAAAC GCAGGTGCCC
GCAGGACCGT TCCGTATTCA GGATCTCAAC CAGTCCGTTT CCGGTACGTT GCACGTCACC
GTGGAAGAGC AGAACGGTCA GACCCAGGAG TTTGACGTTA ACACCGCATC GGTTCCCTTC
CTGACGCGCC CCGGCATGGT GCGCTACAAG ATGGCGCTGG GCCGCCCGCA GGACTGGGAT
CATCACCCCA TTACCGGCAC ATTCGCCTCG GCGGAAGCTT CGTGGGGGGT CACCAACGGC
TGGTCGCTCT ATGGCGGCGC AATTGGAGAA AGCAACTATC AGGCCGTGGC GCTGGGAAGC
GGTAAGGATC TTGGCGTGGT GGGCGCGGTG GCGGTCGACA TTACGCACTC CATCGCCCAC
ATGCCGCAAG ACGACGGGTT TGACGGCGAA ACGCTGCAGG GTAACTCATA TCGCATCAGC
TACTCCCGTG ACTTTGATGA AATCGACAGC CGACTAACCT TTGCCGGATA CCGCTTCTCA
GAAAAGAACT TTATGAGCAT GAGCGACTAT CTGGATGCGA AAACCTATCA TCATCTCAAT
GCCGGTCACG AAAAAGAACG CTATACGGTC ACCTATAACC AGAACTTCCG TGAACAGGGC
ATGAGCGCCT ATTTCAGCTA CTCACGCAGT ACCTTCTGGG ACAGCCCGGA TCAGAGTAAC
TATAACCTGT CTCTTTCCTG GTACTTCGAC TTAGGGTCGA TAAAAAATCT CAGTGCGTCG
CTGAACGGCT ATCGCAGCGA ATATAACGGT GATAAAGATG ATGGCGTTTA TATCTCGCTG
TCTGTTCCCT GGGGCAATGA TTCCATCAGC TACAACGGTA CGTTTAACGG TAGTCAACAC
CGTAATCAGC TCGGCTATTC CGGCCACAGC CAGAACGGCG ATAACTGGCA GCTTCACGTC
GGGCAGGATG AACAAGGCGC ACAGGCAGAC GGTTATTACA GCCATCAGGG CGCGCTGACG
GACATCGATC TGAGCGCGGA TTATGAAGAA GGATCGTACC GTTCGCTGGG CATGTCGCTG
CGCGGCGGCA TGACGCTGAC CACCCAGGGC GGCGCGCTAC ACCGGGGAAG TTTAGCGGGC
AGCACACGTT TGCTGGTTGA TACCGACGGC ATTGCGGACG TCCCCGTTAG CGGTAACGGC
TCGCCAACCT CAACCAACAT TTTCGGCAAG GCCGTGATTG CGGATGTCGG AAGCTATTCG
CGCAGCCTGG CGCGTATCGA TCTGAACAAA TTGCCGGAGA AGGCGGAAGC TACTAAGTCG
GTTGTGCAGA TCACGCTCAC CGAAGGCGCC ATCGGCTACC GTCACTTTGA CGTGGTCAGC
GGCGAGAAAA TGATGGCGGT TTTCCGGCTG GCAGACGGCG ACTTCCCACC GTTCGGCGCC
GAAGTGAAAA ACGAGCGCCA GCAGCAGTTG AGCCTGGTGG CCGATGACGG CAACGCCTGG
CTGGCGGGCG TAAAAGCCGG GGAAACATTG AAAGTCTTCT GGGATGGCGC GGCGCAGTGT
GAAGCATCAC TACCGTCCAC GTTTACACCG GAGCTATTGG CCAACGCGCT ATTGCTGCCG
TGCAAAATGC TGGAAGGTCA GCCCCCCACC GCACCGCAGA AAAGTTCTCC GCTGCCTGCG
CAACCGCTAA TCCAGGAACA TACGCAAACC GATGGCCAAC CGGCCGCGCC GGTGGCGACA
ACCACTCAAA CCCCGCCCAT ACCGCTGGCT GACAACCATG CGGTGAATCG CAAGGATATG
GAATAA
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| Protein sequence | MLLSLSPYSA SGKDIEFNTD FLDVKNRDNV NIAQFSRKGF ILPGVYLLQI KINGQTLPQE
FPVNWVIPEH DPQGSEVCAE PELVTQLGIK PELAEKLVWI THGERQCLAP DSLKGMDFQA
DLGHSTLLVN LPQAYMEYSD VDWDPPARWD NGIPGIILDY NINNQLRHDQ ESGSEEQSIS
GNGTLGANLG AWRLRADWQA SYDHRDDDEN TSTLHDQSWS RYYAYRALPT LGAKLTLGES
YLQSDVFDSF NYIGASVVSD DQMLPPKLRG YAPEIVGIAR SNAKVKVSWQ GRVLYETQVP
AGPFRIQDLN QSVSGTLHVT VEEQNGQTQE FDVNTASVPF LTRPGMVRYK MALGRPQDWD
HHPITGTFAS AEASWGVTNG WSLYGGAIGE SNYQAVALGS GKDLGVVGAV AVDITHSIAH
MPQDDGFDGE TLQGNSYRIS YSRDFDEIDS RLTFAGYRFS EKNFMSMSDY LDAKTYHHLN
AGHEKERYTV TYNQNFREQG MSAYFSYSRS TFWDSPDQSN YNLSLSWYFD LGSIKNLSAS
LNGYRSEYNG DKDDGVYISL SVPWGNDSIS YNGTFNGSQH RNQLGYSGHS QNGDNWQLHV
GQDEQGAQAD GYYSHQGALT DIDLSADYEE GSYRSLGMSL RGGMTLTTQG GALHRGSLAG
STRLLVDTDG IADVPVSGNG SPTSTNIFGK AVIADVGSYS RSLARIDLNK LPEKAEATKS
VVQITLTEGA IGYRHFDVVS GEKMMAVFRL ADGDFPPFGA EVKNERQQQL SLVADDGNAW
LAGVKAGETL KVFWDGAAQC EASLPSTFTP ELLANALLLP CKMLEGQPPT APQKSSPLPA
QPLIQEHTQT DGQPAAPVAT TTQTPPIPLA DNHAVNRKDM E
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