Gene SeD_A3030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3030 
Symbol 
ID6871113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp2928215 
End bp2928730 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content56% 
IMG OID642786060 
Productphage major tail tube protein FII 
Protein accessionYP_002216706 
Protein GI198245888 
COG category[R] General function prediction only 
COG ID[COG3498] Phage tail tube protein FII 
TIGRFAM ID[TIGR01611] phage contractile tail tube protein, P2 family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value0.00222332 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTTTAC CACGCAAGTT AAAACACCTG AACCTGTTCA ACGACGGGAA CAACTGGCAG 
GGGATCGTTG AGTCTCTGAC CCTGCCGAAA TTTACCCGCA AGTTTGAGAA GTATCGCGGC
GGCGGTATGC CGGGCGCAGT GGATGTGGAC ATGGGGCTGG ATGACGGCGC ACTGGACACG
GAATTTTCAA TCGGCGGTAC CGAGCTGCTG TTATTCAAGC AGATGGGCAA GGCAACCGTT
GACGGCATCC AGCTGCGTTT CACAGGTTCC ATTCAGCGTG ACGATACCGG CGAAGTGCAG
GCCGTTGAGC TGGTTGTGCG CGGGCGCCAT AAAGAGGTGG ATTCCGGCGA GTGGAAAACC
GGCGAGAGCA GCAGCACCAA AGTCAGCAGT ACCAACAGCT ACGCGAAGCT GACCATTAAT
GGTGAGGTGC TCTATGAGGT CGATCTGGTC AACATGGTAG AAATCGTTGG CGGCGTGGAC
CTGATGGAAG AACACCGTAA TGCCCTTGGC CTCTGA
 
Protein sequence
MALPRKLKHL NLFNDGNNWQ GIVESLTLPK FTRKFEKYRG GGMPGAVDVD MGLDDGALDT 
EFSIGGTELL LFKQMGKATV DGIQLRFTGS IQRDDTGEVQ AVELVVRGRH KEVDSGEWKT
GESSSTKVSS TNSYAKLTIN GEVLYEVDLV NMVEIVGGVD LMEEHRNALG L