Gene SeD_A2926 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2926 
Symbol 
ID6874114 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp2816874 
End bp2817860 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content58% 
IMG OID642785967 
Producthigh-affinity nickel-transporter 
Protein accessionYP_002216617 
Protein GI198244713 
COG category[R] General function prediction only 
COG ID[COG2215] ABC-type uncharacterized transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones84 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGTAA TTTTTTCTCA ACGCACTCCG GGGCGACGCT GGCTCTCGCT GTGGCCATTG 
GCGTTATTCC TGCTGCTGAT GCTGGTTGGC GGTCTGTGGA TATGGCAGGC CTGGCCGCAG
GTGATGTTGA AAAGCGCTCT TTGGCAGCGG GACGTAAATC AGCAGTTGAG CGCGCTGCTT
AATGCGGTGG CGACGCATCC TGAGCGGGCG GGCGGATCGT TGCTTCTGCT GAGTTTTATG
TATGGCGTGC TTCATGCTCT GGGGCCGGGA CACGGCAAAG TGGTGATCGC GACATGGCTG
GCGACGCATC CTTCGAAGTT GAAATCGAGT ATCGTGTTAA CCCTCGCCGC CGCGTTATTA
CAGGGGCTCG TGGCTATCGG GTTGGTGGTG GGCGTGCTGA CCGTATTGCA ACTTCCGGCC
AGGCAGCTCC ATCTGAGCGG CTTCTGGCTG GAAAAGGGGA GCTATGCGTT AGTTGGCGGG
CTGGGCATTT TGCTGTGCTG GCGGGCCATA AAAAGGTTAC GCGCGCTGCT ACGTAAACCT
GTCTTTATCG CTTTTACGCC GCGCCATGTT CACCATGAAA AATGCGGCTG CGGACATCAG
CATTTACCGA CGCAGGAACA ATTGCATAGC GGCGATGACT GGCGCGCGCG ACTCATGATC
GTACTGTCTA TGGGGATGCG GCCCTGTTCC GGCGCGATAA TGGTGCTGTT ATTCAGTAAA
GTGATTGGCG TTTTTAGCTG GGGAATGGCG TCGGTACTGG CGATGGCGGC GGGAACCTCG
CTAACGATTA CCTCGCTGGC GCTGCTGGTA CACACTTTTC GTGATCTGGC GGTGAAACTC
AGTGGAAACA AAGCGCCGGC GTTATGGCGG CAGGTAGGCT GGTCAACGCT GGCGCTGGCC
GGAGGGGGCA TACTGCTTGT TGCGGCGCTG GTCATGTGGT TTAGCGTGCC GCAGCCTGTG
GGCGGGCTGC GGCCATGGCG TGGTTGA
 
Protein sequence
MSVIFSQRTP GRRWLSLWPL ALFLLLMLVG GLWIWQAWPQ VMLKSALWQR DVNQQLSALL 
NAVATHPERA GGSLLLLSFM YGVLHALGPG HGKVVIATWL ATHPSKLKSS IVLTLAAALL
QGLVAIGLVV GVLTVLQLPA RQLHLSGFWL EKGSYALVGG LGILLCWRAI KRLRALLRKP
VFIAFTPRHV HHEKCGCGHQ HLPTQEQLHS GDDWRARLMI VLSMGMRPCS GAIMVLLFSK
VIGVFSWGMA SVLAMAAGTS LTITSLALLV HTFRDLAVKL SGNKAPALWR QVGWSTLALA
GGGILLVAAL VMWFSVPQPV GGLRPWRG