Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A2473 |
Symbol | mdtB |
ID | 6873205 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 2347148 |
End bp | 2350270 |
Gene Length | 3123 bp |
Protein Length | 1040 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642785556 |
Product | multidrug efflux system subunit MdtB |
Protein accession | YP_002216214 |
Protein GI | 198244828 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 67 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGTAT TACCTCCGGG CAGCACGGGC GGCCCCTCGC GTCTGTTTAT TCTGCGCCCC GTGGCCACCA CTCTGCTGAT GGCGGCGATT TTACTCGCCG GGATTATCGG CTATCGCTTC CTGCCCGTCG CCGCTTTGCC GGAGGTCGAC TACCCCACTA TTCAGGTTGT TACGCTCTAC CCTGGCGCCA GCCCGGATGT CATGACCTCC GCCGTCACCG CGCCGCTTGA GCGCCAGTTC GGCCAGATGT CAGGACTGAA GCAGATGTCG TCGCAAAGCT CCGGCGGCGC GTCGGTGGTA ACGCTACAGT TTCAGTTGAC GCTGCCGCTG GACGTTGCCG AGCAGGAAGT ACAGGCGGCG ATTAACGCAG CCACCAATTT ATTGCCTTCC GACCTGCCGA ATCCGCCGAT TTATAGCAAA GTCAATCCGG CGGACCCGCC GATTATGACG CTTGCCGTCA CCTCAAACGC GATGCCAATG ACTCAGGTAG AGGACATGGT AGAAACCCGC GTGGCGCAGA AGATCTCGCA GGTCTCCGGC GTCGGACTGG TGACGCTTGC CGGCGGGCAG CGCCCTGCAG TACGCGTAAA ACTGAATGCT CAGGCTATCG CCGCGCTCGG TCTGACCAGC GAAACGGTCC GTACCGCAAT TACCGGCGCC AACGTCAACT CGGCGAAAGG CAGTCTGGAT GGCCCCGAGC GGGCGGTGAC GCTTTCTGCT AACGATCAGA TGCAGTCTGC CGACGAATAC CGCAAGCTTA TCATCGCGTA TCAAAACGGC GCGCCGGTAC GGTTGGGCGA TGTCGCCACC GTCGAACAGG GGGCGGAAAA TAGCTGGCTC GGCGCATGGG CGAATCAAGC GCCGGCTATC GTGATGAACG TTCAACGCCA GCCCGGCGCC AATATCATTG CGACAGCGGA CAGCATTCGC CAGATGCTGC CCCAGCTTAC CGAAAGCCTG CCGAAATCGG TGAAGGTCAC GGTCCTGTCC GATCGCACCA CCAATATTCG CGCTTCCGTG CGCGATACCC AGTTTGAACT GATGCTGGCG ATCGCGCTGG TCGTCATGAT TATCTATCTG TTTTTACGTA ATATTCCCGC CACAATTATT CCCGGCGTCG CCGTACCGCT GTCGCTTATC GGCACCTTTG CGGTGATGGT GTTTTTGGAT TTTTCCATTA ATAACCTGAC GCTGATGGCG CTCACTATCG CCACGGGTTT CGTGGTGGAC GATGCGATTG TGGTGATCGA GAACATCTCG CGCTACATCG AAAAAGGAGA AAAACCGCTG GCGGCGGCGC TCAAAGGCGC GGGCGAAATC GGCTTTACCA TTATTTCCCT CACCTTTTCA CTGATTGCGG TGCTGATCCC GTTGCTCTTT ATGGGCGATA TTGTTGGTCG ACTGTTCCGC GAATTTGCGG TGACGTTGGC GGTAGCGATT TTAATCTCCG CCGTCGTCTC TTTGACGCTC ACGCCCATGA TGTGCGCGCG TATGCTCAGC CAGCAGTCTC TGCGTAAACA AAACCGCTTT TCCCGCGCCT GCGAGCGGAT GTTTGACCGC GTGATCGCCA GCTACGGACG CGGATTAGCG AAAGTGCTCA ACCATCCGTG GCTTACATTG AGCGTGGCAT TCGCCACGCT CCTGCTCAGC GTTATGCTGT GGATAGTCAT TCCGAAAGGG TTCTTTCCGG TACAGGATAA CGGCATTATC CAGGGGACGC TGCAGGCGCC GCAATCGTCA TCGTATGCCA GTATGGCGCA ACGTCAACGC CAGGTGGCGG AGCGGATATT ACAGGACCCG GCGGTGCAAA GCCTGACGAC TTTTGTTGGC GTAGACGGCG CTAACCCCAC GCTCAATAGC GCGCGCCTGC AAATTAACCT CAAGCCGCTG GATGCGCGTG ATGACCGCGT GCAGCAGGTG ATCTCCCGGC TGCAAACCGC CGTGGCGACG ATTCCCGGCG TGGCGCTGTA TCTCCAGCCG ACGCAGGATT TAACCATCGA CACGCAGGTC AGCCGCACGC AGTATCAGTT TACCCTGCAG GCCACGACGC TCGATGCGCT CAGCCACTGG GTGCCAAAAC TGCAGAACGC GCTACAGTCG TTACCACAGC TCTCTGAGGT AAGCAGTGAC TGGCAAGATC GAGGATTAGC GGCCTGGGTG AATGTCGACC GCGACAGCGC CAGCCGTCTG GGTATCAGCA TGGCGGATGT GGATAACGCG CTCTACAACG CGTTCGGACA ACGCCTGATT TCAACGATTT ATACCCAGGC GAACCAGTAC CGCGTCGTGC TGGAACATAA TACCGCCAGC ACGCCGGGCC TGGCGGCGCT GGAGACGATT CGCCTGACGA GCCGCGACGG CGGCACCGTA CCGCTCAGCG CGATTGCCCG CATTGAGCAG CGCTTCGCTC CGCTCTCCAT CAATCATTTA GATCAGTTCC CGGTTACGAC ATTTTCGTTT AACGTGCCGG AGGGCTATTC GCTCGGCGAT GCGGTGCAGG CGATTCTCGA TACGGAAAAA ACGCTCGCCC TGCCAGCAGA TATTACAACG CAGTTTCAGG GTAGTACGCT CGCCTTCCAG GCGGCGCTAG GCAGCACCGT CTGGCTTATT GTCGCCGCCG TGGTGGCGAT GTATATCGTG CTCGGCGTGC TGTATGAGAG TTTTATCCAT CCGATCACGA TTCTCTCAAC GCTGCCGACG GCGGGCGTCG GCGCGCTGCT GGCGCTGATC ATCGCTGGTA GCGAGCTCGA TATTATCGCC ATTATCGGCA TTATTTTGCT GATCGGCATC GTGAAGAAAA ACGCCATCAT GATGATTGAC TTCGCCCTCG CCGCTGAACG CGAACAGGGG ATGAGTCCGC GCGACGCTAT CTTCCAGGCC TGTCTGCTGC GTTTTCGACC GATTCTGATG ACCACGCTGG CGGCGTTGCT CGGGGCATTG CCATTAATGT TGAGTACCGG CGTTGGCGCG GAATTACGTC GCCCGTTGGG GATCGCGATG GTGGGCGGCC TACTGGTCAG CCAGGTATTA ACTCTGTTTA CCACTCCGGT GATTTATCTC CTGTTTGACC GCCTGTCGCT GTACGTGAAA AGTCGCTTTC CGCGCCATAA AGAGGAGGCG TAG
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Protein sequence | MQVLPPGSTG GPSRLFILRP VATTLLMAAI LLAGIIGYRF LPVAALPEVD YPTIQVVTLY PGASPDVMTS AVTAPLERQF GQMSGLKQMS SQSSGGASVV TLQFQLTLPL DVAEQEVQAA INAATNLLPS DLPNPPIYSK VNPADPPIMT LAVTSNAMPM TQVEDMVETR VAQKISQVSG VGLVTLAGGQ RPAVRVKLNA QAIAALGLTS ETVRTAITGA NVNSAKGSLD GPERAVTLSA NDQMQSADEY RKLIIAYQNG APVRLGDVAT VEQGAENSWL GAWANQAPAI VMNVQRQPGA NIIATADSIR QMLPQLTESL PKSVKVTVLS DRTTNIRASV RDTQFELMLA IALVVMIIYL FLRNIPATII PGVAVPLSLI GTFAVMVFLD FSINNLTLMA LTIATGFVVD DAIVVIENIS RYIEKGEKPL AAALKGAGEI GFTIISLTFS LIAVLIPLLF MGDIVGRLFR EFAVTLAVAI LISAVVSLTL TPMMCARMLS QQSLRKQNRF SRACERMFDR VIASYGRGLA KVLNHPWLTL SVAFATLLLS VMLWIVIPKG FFPVQDNGII QGTLQAPQSS SYASMAQRQR QVAERILQDP AVQSLTTFVG VDGANPTLNS ARLQINLKPL DARDDRVQQV ISRLQTAVAT IPGVALYLQP TQDLTIDTQV SRTQYQFTLQ ATTLDALSHW VPKLQNALQS LPQLSEVSSD WQDRGLAAWV NVDRDSASRL GISMADVDNA LYNAFGQRLI STIYTQANQY RVVLEHNTAS TPGLAALETI RLTSRDGGTV PLSAIARIEQ RFAPLSINHL DQFPVTTFSF NVPEGYSLGD AVQAILDTEK TLALPADITT QFQGSTLAFQ AALGSTVWLI VAAVVAMYIV LGVLYESFIH PITILSTLPT AGVGALLALI IAGSELDIIA IIGIILLIGI VKKNAIMMID FALAAEREQG MSPRDAIFQA CLLRFRPILM TTLAALLGAL PLMLSTGVGA ELRRPLGIAM VGGLLVSQVL TLFTTPVIYL LFDRLSLYVK SRFPRHKEEA
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