| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1947 |
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| Symbol | |
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| ID | 6872186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 1874900 |
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| End bp | 1876099 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 642785069 |
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| Product | type III secretion apparatus protein, YscD/HrpQ family |
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| Protein accession | YP_002215735 |
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| Protein GI | 198243835 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 0.389941 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAATC CAAAGAGTTC CTGGAAAATA CGTTTTTTAG GTCACGTTTT ACAAGGCCGG
GAAGTATGGC TGAATGAAGG TAACCTGTCA CTGGGGGAGA AAGGATGCGA TATTTGTATT
CCGCTTACTA TAAATGAAAA AATTATTCTG AGAGAACAGG CAGATAATTT ATTTGTTGAT
GCCGGGAAAG CCAGAGTTAG AGTTAATGGC CGCAGATTTA ATCCAAATAA GCCGCTACCA
TCCAGTGGGG TTTTGCAGGT TGCGGGAGTG GCTATCGCGT TTGGTAAACA GGATTGTGAA
CTTGCTGATT ATCAAATACC CGTTTCCAGA TCAGGGTACT GGTGGTTGGC TGGCGTATTC
TTGATTTTCA TCGGTGGAAT GGGTGTCCTG TTAAGTATTA GTGGTCAGCC TGAAACGGTA
AATGACTTAC CTTTGCGGGT TAAGTTTTTA TTAGACAAAA GCAATATTCA TTATGTGCGG
GCGCAATGGA AAGAAGATGG CAGCCTGCAG TTGTCCGGTT ATTGCTCGTC AAGCGAACAG
ATGCAAAAGG TGAGAGCGAC TCTCGAATCA TGGGGGGTCA TGTATCGGGA TGGTGTAATC
TGTGATGACT TATTGGTACG AGAAGTGCAG GATGTTTTGA TAAAAATGGG TTACCCGCAT
GCTGAAGTAT CCAGCGAAGG GCCGGGGAGC GTGTTAATTC ATGATGATAT ACAAATGGAT
CAGCAATGGC GTAAGGTTCA ACCATTACTT GCAGATATTC CCGGGTTATT GCACTGGCAG
ATTAGTCACT CTCATCAGTC TCAGGGAGAT GATATTATTT CTGCGATAAT AGAGAACGGT
TTAGTGGGGC TTGTCAATGT TACGCCAATG CGGCGCTCTT TTGTTATCAG TGGTGTACTG
GATGAATCTC ATCAACGCAT TTTGCAAGAA ACGTTAGCAG CATTAAAGAA AAAGGATCCC
GCTCTTTCTT TAATTTATCA GGATATTGCG CCTTCCCATG ATGAAAGCAA GTATCTGCCT
GCGCCAGTGG CTGGCTTTGT ACAGAGTCGC CATGGTAATT ACTTATTACT GACGAATAAA
GAGCGTTTAC GTGTAGGGGC ATTGTTACCC AATGGGGGAG AAATTGTCCA TCTGAGTGCC
GATGTGGTAA CGATTAAACA TTATGATACT TTGATTAACT ATCCATTAGA TTTTAAGTGA
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| Protein sequence | MVNPKSSWKI RFLGHVLQGR EVWLNEGNLS LGEKGCDICI PLTINEKIIL REQADNLFVD
AGKARVRVNG RRFNPNKPLP SSGVLQVAGV AIAFGKQDCE LADYQIPVSR SGYWWLAGVF
LIFIGGMGVL LSISGQPETV NDLPLRVKFL LDKSNIHYVR AQWKEDGSLQ LSGYCSSSEQ
MQKVRATLES WGVMYRDGVI CDDLLVREVQ DVLIKMGYPH AEVSSEGPGS VLIHDDIQMD
QQWRKVQPLL ADIPGLLHWQ ISHSHQSQGD DIISAIIENG LVGLVNVTPM RRSFVISGVL
DESHQRILQE TLAALKKKDP ALSLIYQDIA PSHDESKYLP APVAGFVQSR HGNYLLLTNK
ERLRVGALLP NGGEIVHLSA DVVTIKHYDT LINYPLDFK
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