| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1688 |
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| Symbol | nifJ |
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| ID | 6875797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 1622958 |
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| End bp | 1626482 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642784829 |
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| Product | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
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| Protein accession | YP_002215497 |
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| Protein GI | 198245539 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
[COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
[COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
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| TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 0.0137734 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACAA TTGACGGTAA TGGCGCAGTA GCGTCGGTGG CGTTCCGTAC CAGCGAGGTT
ATCGCCATTT ACCCGATTAC GCCCAGTTCA ACAATGGCTG AACAAGCGGA TGCCTGGGCC
GGCAATGGGC TTAAAAATGT CTGGGGCGAT ACGCCGCGTG TGGTAGAGAT GCAGTCGGAA
GGCGGCGCGA TCGCCGCCGT TCACGGTGCG TTACAAACCG GTTCGCTTTC TACGTCATTT
ACATCATCGC AGGGGCTGCT GCTGATGATT CCAACGCTGT ATAAACTGGC GGGGCAGCTC
ACGCCGTTTG TACTGCACGT TGCCGCGCGC ACTGTCGCCA CACACGCGCT TTCTATTTTT
GGCGACCATT CCGATGTGAT GGCGGTCCGC CAGACAGGCT GCGCGATGTT ATGCGCCGCC
AGCGTTCAGG AAGCGCAGGA TTTTGCGCTG ATCGCACACA GGGCTACGCT GAAAAGCCGC
GTTCCGTTTA TTCATTTTTT TGATGGCTTC CGTACATCGC ATGAAATCAA CAAAATTATA
CCGCTAACGA ATGAAACCAT TCTGAACCTG ATGCCGCAGG CGGAGATCGA CGCTCACCGC
GCCCGCGCGC TGAATCCGGA ACATCCGGTG ATTCGTGGAA CTTCAGCGAA TCCGGACACC
TACTTCCAGT CTCGCGAAGC GACCAACCCG TGGTACAACG CCGTTTATGA TCATGTTGAA
GAGGCGATGA AGGCATTTGG CGACGCTACG GGCCGTCAGT ACCAGCCATT TGAATATTAT
GGCCATCCCC AGGCTGAACG CGTCATCATA ATGATGGGCT CCGCCCTCGG CACCTGCGAA
GAGGTCGTGG ACGAGCTACT GATACGCGGA GAAAAGGTCG GCGTTCTGAA AGTCCGTCTG
TTCCGCCCCT TCTCCGCCAA ACATTTGTTA CAGGCATTAC CGGAAACCGT TCGCGCTATC
GCCGTGCTGG ATCGCACCAA AGAGCCTGGC GCCCAGGCCG AGCCGCTTTA TCTGGACGTG
ATGACCGCAC TGGCGGAGGC CTTTAATAAT GGCGAGCGCG AAACGTTGCC GCGCACCATT
GGCGGCCGTT ATGGGCTATC ATCCAAAGAG TTCGGCCCGG CGTGCGTACT GGCGGTCTTT
AATGAACTCA GCCGTGCGAA ACCCAAGCCA CGGTTTACGG TGGGCATTTA TGATGACGTT
ACTAACCTCT CGCTGCCATT ACCGGAAAAT ACCCTGCCCG GCAGCGCTAA ACTTGAAGCG
TTATTTTACG GTCTGGGAAG CGACGGCAGC GTATCCGCCA CGAAAAATAA TATTAAAATT
ATCGGTAATT CTACGCCGTG GTATGCGCAA GGTTATTTCG TTTATGACTC TAAAAAAGCT
GGCGGGCTCA CGGTATCGCA CCTGCGCGTC AGCGAAAAAC CCATTCGTTC CGCTTACTTA
ATTGCTCAGG CGGATTTTGT CGGCTGCCAT CAATTACAGT TTATCGATAA ATATCAGATG
GCGGAGCGTC TGAAGCCCGG CGGTATCTTT CTGCTTAATA CGCCGTACAG CGCCGACGAG
GTCTGGTCGC GTCTGCCGCA AGAAGTTCAG GCGGTGTTGA ATCAGAAAAA GGCGCGTTTT
TACGTGGTTA ACGCGGCGAA AATCGCCCGC GAATGTGGAC TTGGCGCCCG CATCAATACC
GTCATGCAAA TGGCTTTCTT CCACCTGACG CATATTCTTC CGGGCGATAG CGCCCTGGTT
GAGCTGCAGG GCGCGATTGC CAAAAGCTAT AGCAGCAAAG GACAGGATCT GGTTGAGCGT
AACTGGCAGG CATTGGCTCT GGCGCAGGAA TCGCTGGCGG AAGTGCCGTT GCAGGCGGTT
AATCCGCATA GCGCGCATCG CCCGCCGGTC GTCTCCGACG CCGCGCCGGA TTTCGTGAAA
ACCGTTACCG CCGCCATGTT GGCGGGCCTC GGCGACGCAC TGCCTGTTTC CGCCCTGCCG
CCGGACGGAA CATGGCCAAT GGGCACCACC CGCTGGGAAA AACGCAATAT CGCCGAAGAG
ATTCCTGTCT GGAAAGAGGA ACTGTGTACA CAATGTAATC ACTGCGTCGC CGCCTGCCCT
CACTCGGCGA TTCGTGCAAA AGTCGTTTCC CCGCAGGCGA TGGAGAACGC GCCAGCCAGT
CTGCATTCGC TGGACGTGAA GTCCCGCGAT ATGCGCGGCC AGAAATATGT GCTGCAGGTC
GCGCCGGAAG ACTGTACTGG CTGTAATTTA TGCGTAGAGG TCTGCCCGGC TAAAGATCGG
CAAAATCCAC AGATCAAGGC TATTAACATG ATGTCGCGCC TGGAGCATGT GGAAGAAGAG
AAAGTGAATT ATGACTTTTT CCTCGACTTA CCGGAAATCG ATCGCAGCAA ACTGGAACGA
ATTGATATCC GCACATCGCA GCTTATTACG CCGCTGTTTG AATATTCCGG CGCCTGTTCC
GGCTGCGGTG AAACGCCGTA TATTAAACTG CTGACTCAGT TATATGGCGA CAGAATGTTA
ATCGCTAACG CCACGGGGTG TTCCTCTATT TACGGCGGTA ACTTACCCTC TACGCCTTAT
ACCACCGATG CCAACGGACG CGGCCCGGCG TGGGCGAATT CGCTATTTGA AGATAACGCG
GAATTTGGCC TCGGTTTCCG TCTGAGTGTG GATCAGCACC GGGCGCGCGT CATGCGTTTA
CTGGCGCAAT TCGCCGATCG CATTCCGGCG GAATTAAACG ATGCGCTGCA TGCCGAAGCA
ACGCCTGACG TTCGGCGTGA ACAGGTCGCC GCATTACGCC AACATCTGAA ATCGGTTGCG
GGCGCAGAGG AACTGTTAAA GGATGCTGAT GCGCTGGTAG AAAAATCAAT CTGGCTGATT
GGCGGCGATG GTTGGGCATA CGACATCGGC TTTGGCGGTT TAGACCATGT GTTAAGCCTG
ACGGAGAATG TCAATATTCT GGTTCTGGAT ACGCAGTGTT ATTCCAATAC TGGCGGCCAG
GCGTCGAAGG CGACGCCGCT TGGCGCCGTC ACTAAGTTTG GCGAACATGG CAAGCGTAAA
GCCCGTAAAG ATCTTGGCGT CAGCATGATG ATGTATGGTC ATGTTTATGT CGCGCAAATT
TCGCTGGGCG CGCAGTTAAA CCAGACGGTG AAAGCCATCC AGGAGGCCGA AGCCTGGCCA
GGACCGTCGC TGATCATTGC CTATAGCCCC TGTGAGGAAC ATGGTTACGA TCTGGCGCTA
AGCCATGACC AGATGCGCCA GTTAACGGCG ACCGGTTTCT GGCCGTTATA CCGCTTTGAT
CCCCGCCGTG CGGATGAAGG CAAGCCGCCG CTGGCTCTGG ACTCTCGGCC ACCGTCTGAT
GCCCTGGCGG AAACGTTGCT TAATGAACAG CGTTTCCGTC GCCTGAATGC GCAACAGCCT
GAAGTAGCTG AACAATTATG GCGAGATGCC GCATTGGATT TGCAAAAACG CTATGACTTT
CTTGCCTTGC TGGCAGGAAA AGCGGAAAAA CCCGGCGCAG ATTAA
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| Protein sequence | MQTIDGNGAV ASVAFRTSEV IAIYPITPSS TMAEQADAWA GNGLKNVWGD TPRVVEMQSE
GGAIAAVHGA LQTGSLSTSF TSSQGLLLMI PTLYKLAGQL TPFVLHVAAR TVATHALSIF
GDHSDVMAVR QTGCAMLCAA SVQEAQDFAL IAHRATLKSR VPFIHFFDGF RTSHEINKII
PLTNETILNL MPQAEIDAHR ARALNPEHPV IRGTSANPDT YFQSREATNP WYNAVYDHVE
EAMKAFGDAT GRQYQPFEYY GHPQAERVII MMGSALGTCE EVVDELLIRG EKVGVLKVRL
FRPFSAKHLL QALPETVRAI AVLDRTKEPG AQAEPLYLDV MTALAEAFNN GERETLPRTI
GGRYGLSSKE FGPACVLAVF NELSRAKPKP RFTVGIYDDV TNLSLPLPEN TLPGSAKLEA
LFYGLGSDGS VSATKNNIKI IGNSTPWYAQ GYFVYDSKKA GGLTVSHLRV SEKPIRSAYL
IAQADFVGCH QLQFIDKYQM AERLKPGGIF LLNTPYSADE VWSRLPQEVQ AVLNQKKARF
YVVNAAKIAR ECGLGARINT VMQMAFFHLT HILPGDSALV ELQGAIAKSY SSKGQDLVER
NWQALALAQE SLAEVPLQAV NPHSAHRPPV VSDAAPDFVK TVTAAMLAGL GDALPVSALP
PDGTWPMGTT RWEKRNIAEE IPVWKEELCT QCNHCVAACP HSAIRAKVVS PQAMENAPAS
LHSLDVKSRD MRGQKYVLQV APEDCTGCNL CVEVCPAKDR QNPQIKAINM MSRLEHVEEE
KVNYDFFLDL PEIDRSKLER IDIRTSQLIT PLFEYSGACS GCGETPYIKL LTQLYGDRML
IANATGCSSI YGGNLPSTPY TTDANGRGPA WANSLFEDNA EFGLGFRLSV DQHRARVMRL
LAQFADRIPA ELNDALHAEA TPDVRREQVA ALRQHLKSVA GAEELLKDAD ALVEKSIWLI
GGDGWAYDIG FGGLDHVLSL TENVNILVLD TQCYSNTGGQ ASKATPLGAV TKFGEHGKRK
ARKDLGVSMM MYGHVYVAQI SLGAQLNQTV KAIQEAEAWP GPSLIIAYSP CEEHGYDLAL
SHDQMRQLTA TGFWPLYRFD PRRADEGKPP LALDSRPPSD ALAETLLNEQ RFRRLNAQQP
EVAEQLWRDA ALDLQKRYDF LALLAGKAEK PGAD
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