Gene SeD_A1639 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1639 
SymbolsapB 
ID6873961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1582316 
End bp1583281 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content53% 
IMG OID642784783 
Productpeptide ABC transporter permease SapB 
Protein accessionYP_002215451 
Protein GI198243540 
COG category[V] Defense mechanisms 
COG ID[COG4168] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.00000008578 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTATCT TCACCCTGCG TCGGTTATTG CTGTTGCTGG TGACGCTATT CTTCCTGACC 
TTTATCGGCT TTAGCCTGAG CTATTTTACG CCGCACGCGC CGCTACAAGG CGCATCATTA
TGGAATGCCT GGGTTTTCTG GTTCAACGGT CTGCTGCACT GGGACTTTGG CGTGTCCAGC
ATTAACGGCC AGCTGATCTC CGAACAGCTT AAAGAGGTGT TTCCCGCCAC GATGGAGCTG
TGCATTCTCG CCTTTGGTTT TGCGCTGATG GTCGGCATCC CGGTCGGGAT GCTGGCTGGC
GTGACGCGTA GCAAATGGCC GGATCGTTTT ATCAGCGCGC TGGCGCTATT AGGTTTCTCA
ATTCCGGTTT TCTGGCTGGC GCTTCTGCTC ACACTGTTCT TTTCGCTCAC GCTGGGGTGG
CTGCCGGTAT CCGGGCGATT TGACCTGCTT TATGAAGTTA AACCGGTTAC CGGTTTCGCC
ATCATTGACG CCTGGATTTC AGATTCGCCA TGGCGTGATG AAATGGTGAT GAGCGCCATA
CGGCATATGG TTTTACCGGT GCTCACGCTC TCCGTCGCGC CGACCACAGA AGTGATCCGC
CTGATGCGAA TCAGCACTAT TGAGGTCTAC GATCAGAACT ACGTTAAAGC GGCGGCCACG
CGCGGCTTAT CGCGCTTTAC GATTTTACGC CGTCACGTGT TGCATAATGC GCTGCCGCCG
GTCATTCCCC GTCTTGGTCT GCAGTTTTCA ACCATGTTAA CGCTGGCGAT GATTACCGAA
ATGGTTTTCA GCTGGCCTGG GCTGGGACGA TGGTTAATTC ACGCCATTCG TCAGCAGGAC
TATGCCGCTA TTTCCGCTGG CGTGATGGTC ATTGGGTCGC TGGTTATTGT GGTCAATGTG
ATTTCCGATA TTTTGGGTGC TATGGCTAAC CCTCTGAAAC ATAAGGAATG GTATGCCTTA
CGATAG
 
Protein sequence
MIIFTLRRLL LLLVTLFFLT FIGFSLSYFT PHAPLQGASL WNAWVFWFNG LLHWDFGVSS 
INGQLISEQL KEVFPATMEL CILAFGFALM VGIPVGMLAG VTRSKWPDRF ISALALLGFS
IPVFWLALLL TLFFSLTLGW LPVSGRFDLL YEVKPVTGFA IIDAWISDSP WRDEMVMSAI
RHMVLPVLTL SVAPTTEVIR LMRISTIEVY DQNYVKAAAT RGLSRFTILR RHVLHNALPP
VIPRLGLQFS TMLTLAMITE MVFSWPGLGR WLIHAIRQQD YAAISAGVMV IGSLVIVVNV
ISDILGAMAN PLKHKEWYAL R