Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1636 |
Symbol | sapF |
ID | 6875321 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 1579639 |
End bp | 1580445 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642784780 |
Product | peptide ABC transporter ATP-binding protein SapF |
Protein accession | YP_002215448 |
Protein GI | 198245279 |
COG category | [V] Defense mechanisms |
COG ID | [COG4167] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.55489 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.00000000158294 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTGGAAA CTCTGCTTGA AGTGCGCAAC CTGAGTAAAA CCTTTCGCTA CCGGACAGGA TGGTTTCGCC GCCAGACCGT CGACGCCGTG AAACCATTAA GCTTTACGCT TCGTGAGCGT CAGACCCTGG CCATTATCGG CGAAAACGGT TCCGGCAAAT CCACGCTGGC AAAGATGCTG GCCGGCATGA TTGAACCCAC CAGCGGCGAG CTTCTTATTG ACGATCATCC CCTGCATTAC GGCGACTATT CGTTTCGAAG CCAACGTATT CGAATGATTT TTCAGGACCC CTCAACGTCA CTGAATCCAC GTCAACGTAT TTCGCAGATC CTTGACTTCC CCCTGCGCCT TAATACCGAT CTGGAGCCGG AACAGCGGCG CAAACAGATT GTCGAGACGA TGCGTATGGT GGGGCTATTG CCCGATCACG TGAGCTACTA CCCGCATATG CTGGCGCCGG GGCAGAAACA GCGTCTGGGC CTGGCCCGCG CGCTGATTTT ACGCCCTAAA GTCATTATCG CGGACGAAGC GCTGGCTTCG CTTGATATGT CCATGCGCTC GCAGCTCATC AATCTGATGC TTGAATTGCA GGAAAAGCAA GGCATCTCCT ATATCTATGT CACGCAGCAT ATCGGCATGA TGAAGCATAT TAGCGATCAG GTATTAGTGA TGCATCAGGG GGAAGTGGTT GAACGCGGCA GCACCGCCGA TGTGCTCGCC TCTCCGCTAC ATGAGCTTAC CCGCCGTTTA ATCGCAGGCC ATTTTGGCGA GGCGCTGACC GCTGACGCAT GGCGAAAGGA TCGCTAA
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Protein sequence | MVETLLEVRN LSKTFRYRTG WFRRQTVDAV KPLSFTLRER QTLAIIGENG SGKSTLAKML AGMIEPTSGE LLIDDHPLHY GDYSFRSQRI RMIFQDPSTS LNPRQRISQI LDFPLRLNTD LEPEQRRKQI VETMRMVGLL PDHVSYYPHM LAPGQKQRLG LARALILRPK VIIADEALAS LDMSMRSQLI NLMLELQEKQ GISYIYVTQH IGMMKHISDQ VLVMHQGEVV ERGSTADVLA SPLHELTRRL IAGHFGEALT ADAWRKDR
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