Gene SeD_A1413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1413 
Symbol 
ID6874983 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1380989 
End bp1381738 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content51% 
IMG OID642784579 
Productgifsy-2 prophage VmtV 
Protein accessionYP_002215249 
Protein GI198242872 
COG category[N] Cell motility 
COG ID[COG5492] Bacterial surface proteins containing Ig-like domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value0.000750798 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACAGACA CGACAATTCC TAATCCACTT GCGCCGGTAA AAGGCGCAAA TACCACATTC 
TGGATGTACA ACAGCGAGGG TGATCCGTTC GCCAGCCCGC TAAGTGATAA TAACTGGCTG 
AGGCTGGCAA ACGTAAAAGA CCTGCAGCCG GGAGAACTGA CGGCAGATGC AGAAGATAAT 
AACTATCTTG ATGACGAGAA CGCTGACTGG AAAAGTACCA CACAGGGACA GAAGTCTGCC 
GGGGATACTT CTGTGACGCT GGCGTGGAAG CCAGGTGAGG ACGTACAGAA AAAGCTTATT 
CAACTGTTCA CGACCGGGCA GAAGCGCGGA TTCCGGATCA AGTATCCGAA CGGCACTGTT 
GATGTGTTCA GAGGCTGGGT GAGCTCGCTG GGGAAAACGG TGCAGAGTAA GGATGAGATC 
GCCCGTACAG TAAAAATTAC CAGTGTGGGC CGTCCGTACA TGGCTGAAGA GGATGCACCG 
GAAGTGGTTA GTGTTACCGG ACTGACAGTG GAACCGACAA ATGCCACCGT GAAGGTCGGC 
GCCACAACAG CGGTTACGTT CACGGTGAAA CCGGATAACG TGACAGATAA ATCACTGCGT 
ATCGCAACGT CAGATCCGAC TACAGCCACC GTCACGCAGG CGGAAAATAT TGCCACTGTA 
AAAGGTGTTA AGGTAGGTAC AGTGAAAATT ATTGGCATGA CAACAGACGG TAATTTTACC 
GCTATTGCGG ATATTACTGT TCAGGCATAA
 
Protein sequence
MTDTTIPNPL APVKGANTTF WMYNSEGDPF ASPLSDNNWL RLANVKDLQP GELTADAEDN 
NYLDDENADW KSTTQGQKSA GDTSVTLAWK PGEDVQKKLI QLFTTGQKRG FRIKYPNGTV 
DVFRGWVSSL GKTVQSKDEI ARTVKITSVG RPYMAEEDAP EVVSVTGLTV EPTNATVKVG 
ATTAVTFTVK PDNVTDKSLR IATSDPTTAT VTQAENIATV KGVKVGTVKI IGMTTDGNFT 
AIADITVQA