Gene SeD_A1312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1312 
Symbol 
ID6873989 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1289861 
End bp1290499 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content49% 
IMG OID642784480 
Producthypothetical protein 
Protein accessionYP_002215150 
Protein GI198243351 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0698] Ribose 5-phosphate isomerase RpiB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.00000000000032652 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAATTG CACTGATGAT GGAAAATAGC CAGGCCAGCA AAAATGCCAT CATTTATAAC 
GAACTTAGCG CCGTCGCCAA TGAAAAGGGA TTTCCCGTTT TTAACGTCGG CATGTGCGAC 
GAAAATGACC ATCACCTGAC GTACATTCAT TTAGGCATCA TGGCGAGTAT TCTGCTTAAT 
GCAAACGCGG TTGATTTTGT GGTTACTGGC TGTGGCACCG GTCAGGGCGC GCTGATGTCG 
TTAAATATTC ATCCAGGTGT CATTTGTGGC TATTGCATCG ATCCGGCAGA TGCTTTTCTG 
TTTGCGCAGA TCAACAACGG CAATGCGTTG TCCCTGCCAT TTGCGAAAGG CTTTGGCTGG 
GGCGCTGAGC TGAACGTGCG TTTCATCTTT GAAAAAGCGT TTACCGGGCG TAAAGGCGAG 
GGGTATCCGC CTGAGCGCAA AGCGCCGCAG GTACGCAATG CGGGCATTTT GAACCAGGTT 
AAGGCCGCGG TCGTCAAAGA GAATTATCTG GATACACTAC GGGCTATCGA TCCTGAACTG 
GTTAAAACGG CGGTTTCAGG GCCGCGTTTC CAGCAATGTT TGTTTGAAAA CGGCCAGAAT 
AAAGAAATAG AAGCGTTTGT ACGTGAGATG CTGGGGTAA
 
Protein sequence
MKIALMMENS QASKNAIIYN ELSAVANEKG FPVFNVGMCD ENDHHLTYIH LGIMASILLN 
ANAVDFVVTG CGTGQGALMS LNIHPGVICG YCIDPADAFL FAQINNGNAL SLPFAKGFGW 
GAELNVRFIF EKAFTGRKGE GYPPERKAPQ VRNAGILNQV KAAVVKENYL DTLRAIDPEL 
VKTAVSGPRF QQCLFENGQN KEIEAFVREM LG