Gene SeD_A1126 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1126 
Symbol 
ID6874989 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1118443 
End bp1119411 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content41% 
IMG OID642784311 
Productsecreted effector protein 
Protein accessionYP_002214985 
Protein GI198245372 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones79 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCTTTC ATATTGGAAG CGGATGTCTT CCCGCCATCA TCAGTAACCG CCGCATTTAT 
CGTATTGCCT GGTCTGATAC CCCCCCTGAA ATGAGTTCCT GGGAAAAAAT GAAGGAATTT 
TTTTGCTCAA CGCACCAGAC TGAAGCGCTG GAGTGCATCT GGACGATTTG TCACCCGCCG 
GCCGGAACGA CGCGGGAGGA TGTGGTCAGC AGATTTGAAC TGCTCAGGAC GCTCGCGTAT 
GACGGATGGG AGGAAAACAT TCATTCCGGC CTGCACGGGG AAAACTACTT CTGTATTCTG 
GATGAAGACA GTCAGGAGAT ATTATCAGTC ACCCTGGATG ACGTCGGGAA CTATACCGTA 
AATTGCCAGG GGTACAGTGA AACACATCAC TTAACCATGG CAACAGAACC GGGAGTGGAA 
CGCACAGATA TAACTTACAA CCTAACCAGT GATATTGATG CTGCGGCCTA TCTGGAGGAA 
TTGAAACAGA ATCCAATTAT AAATAATAAA ATAATGAATC CGGTAGGGCA GTGTGAGTCA 
TTAATGACTC CTGTAAGCAA TTTTATGAAT GAAAAAGGGT TCGATAATAT TCGTTATCGA 
GGTATATTTA TCTGGGATAA ACCAACAGAG GAAATAACAA CAAATCATTT TGCAGTGGTT 
GGAAATAAAG AAGGGAAAGA CTATGTGTTT GATGTTTCAG CCCATCAGTT TGAAAATAGA 
GGTATGAGTA ATCTGAATGG CCCATTAATT CTTTCAGCAG ATGAATGGGT GTGTAAATAT 
AGAATGGCAA CAAGAAGGAA ACTTATTTAT TATACTGATT TTAGTAATTC AAGTATAGCA 
GCTAATGCCT ATGATGCATT ACCACGAGAA TTAGAATCAG AATCTATGGC AGGGAAAGTT 
TTTGTTACAT CACCGAGATG GTTTAATACC TTTAAAAAGC AAAAATATTC CTTAATAGGT 
AAAATGTAA
 
Protein sequence
MPFHIGSGCL PAIISNRRIY RIAWSDTPPE MSSWEKMKEF FCSTHQTEAL ECIWTICHPP 
AGTTREDVVS RFELLRTLAY DGWEENIHSG LHGENYFCIL DEDSQEILSV TLDDVGNYTV 
NCQGYSETHH LTMATEPGVE RTDITYNLTS DIDAAAYLEE LKQNPIINNK IMNPVGQCES 
LMTPVSNFMN EKGFDNIRYR GIFIWDKPTE EITTNHFAVV GNKEGKDYVF DVSAHQFENR 
GMSNLNGPLI LSADEWVCKY RMATRRKLIY YTDFSNSSIA ANAYDALPRE LESESMAGKV 
FVTSPRWFNT FKKQKYSLIG KM