Gene SeD_A1005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1005 
Symbol 
ID6874687 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp996170 
End bp997069 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content51% 
IMG OID642784190 
Producthypothetical protein 
Protein accessionYP_002214865 
Protein GI198245918 
COG category[S] Function unknown 
COG ID[COG2431] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.85615 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones90 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTTCAG GACTTTTAAT CATTCTGGTT CCACTGATTG TGGGCTATCT CATTCCACTG 
CGACATAAAG CCGCATTACA ACTTATTAAC CGGCTACTGA GCTGGATCGT GTACCTTATT 
CTCTTTTTTA TGGGAATAAG CCTGGCGTTT TTGGATAACC TCGCCAGTAA TCTGGTGGCG 
ATTTTTCATT ATTCCGCCGT CAGTATTACG ATTATTTTAT TGTGTAATAT CGCCGCCTTA 
TTGTGGCTGG AACGTATCCT CCCGTGGCGT CACCATCATC AGCAGGAAAA ACTGCCTTCA 
CGTATTGCCA TGGCGCTGGA GTCGCTGCAA CTGTGCGGCG TAGTGGTATT GGGGTTTGTC 
ATCGGCCTGA GCGGACTCTC TGTTTTACAG CACGCCACCG AAGCCAGTGA ATATACGCTG 
ATCTTTTTAT TGTTCCTGGT GGGGATTCAG CTACGAAATA GCGGCATGAC CTTAAAGCAA 
ATTGTGCTTA ACCGCCGGGG AATGATGGTC GCGGTCGTTG TCGTGGCAAG CTCATTACTG 
GGCGGCGTGA TTAATGCGTT TATCCTGGAC TTACCGCTAA AAACCGCCCT GGCGATGGCG 
TCAGGTTTCG GCTGGTACTC TCTTTCCGGT ATTTTGCTGA CGGAGTCGTT TGGACCGGTT 
ATCGGCAGCG CGGCATTTTT TAACGATCTG GCCCGCGAGC TCTTAGCCAT TATGCTTATT 
CCCGGTCTGG TTCGCCGCAG CCGTTCAACG GCGTTGGGCC TGTGCGGAGC GACTTCAATG 
GACTTTACGT TGCCGGTATT ACAGCGCTCC GGCGGCGTAG AGATTGTTCC GGCGGCTATC 
GTACATGGCT TTATCCTCAG CCTGCTGGTC CCCCTCTTAA TGGCGTTCTT CTCGGCCTGA
 
Protein sequence
MFSGLLIILV PLIVGYLIPL RHKAALQLIN RLLSWIVYLI LFFMGISLAF LDNLASNLVA 
IFHYSAVSIT IILLCNIAAL LWLERILPWR HHHQQEKLPS RIAMALESLQ LCGVVVLGFV 
IGLSGLSVLQ HATEASEYTL IFLLFLVGIQ LRNSGMTLKQ IVLNRRGMMV AVVVVASSLL 
GGVINAFILD LPLKTALAMA SGFGWYSLSG ILLTESFGPV IGSAAFFNDL ARELLAIMLI 
PGLVRRSRST ALGLCGATSM DFTLPVLQRS GGVEIVPAAI VHGFILSLLV PLLMAFFSA