Gene SeD_A0519 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0519 
SymbolacrB 
ID6872165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp532563 
End bp535712 
Gene Length3150 bp 
Protein Length1049 aa 
Translation table11 
GC content54% 
IMG OID642783741 
Productacriflavine resistance protein B 
Protein accessionYP_002214428 
Protein GI198246140 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones90 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTAATT TCTTTATCGA TCGCCCTATA TTTGCGTGGG TGATCGCCAT CATCATCATG 
TTGGCAGGGG GGCTCGCGAT CCTCAAATTG CCGGTAGCGC AATATCCGAC GATTGCGCCA
CCAGCAGTGA CGATCTCCGC AACCTACCCT GGCGCTGATG CGAAAACGGT ACAGGATACC
GTCACGCAGG TTATCGAACA GAATATGAAC GGTATCGATA ACCTGATGTA TATGTCCTCC
AACAGTGACT CTACGGGGAC CGTGCAGATC ACGCTGACCT TTGAATCCGG CACCGATGCG
GATATCGCGC AGGTTCAGGT TCAGAACAAG TTGCAACTGG CAATGCCTTT ACTTCCCCAG
GAAGTACAGC AACAGGGCGT GAGCGTTGAG AAGTCCTCAA GTAGCTTCCT GATGGTAGTG
GGCGTCATTA ACACCGACGG CACCATGACC CAGGAGGATA TTTCGGATTA CGTTGCCGCC
AATATGAAAG ATCCGATCAG CCGTACCTCT GGGGTGGGCG ACGTTCAGCT GTTTGGTTCG
CAGTATGCGA TGCGTATCTG GATGAATCCG ACAGAGCTGA CCAAATACCA ACTGACGCCG
GTCGACGTGA TTAACGCGAT CAAAGCGCAG AACGCCCAGG TCGCGGCAGG TCAGCTCGGT
GGTACGCCGC CGGTAAAAGG CCAGCAGCTT AACGCATCGA TTATTGCCCA AACGCGTCTG
ACCTCAACGG ATGAGTTTGG CAAAATCCTG CTGAAAGTGA ATCAGGATGG CTCCCAGGTT
CGTCTGCGGG ATGTAGCGAA AATTGAGCTT GGCGGCGAGA ACTACGACGT CATCGCGAAA
TTTAACGGTC AGCCAGCGTC AGGTCTTGGC ATCAAACTGG CTACCGGCGC CAACGCGCTG
GATACCGCTA CCGCTATTCG CGCCGAACTG AAAAAAATGG AACCGTTCTT CCCGCCAGGG
ATGAAAATCG TCTACCCGTA TGACACCACG CCGTTCGTGA AGATCTCTAT TCATGAAGTG
GTAAAAACGC TGGTCGAAGC GATTATCCTC GTGTTCCTGG TGATGTACCT GTTCCTGCAG
AACTTCCGCG CGACGTTGAT TCCGACTATT GCGGTTCCGG TGGTGTTGTT GGGAACCTTT
GCCGTGCTTG CGGCATTCGG TTTCTCGATA AACACGCTGA CGATGTTCGG GATGGTGCTC
GCCATCGGCT TGCTGGTGGA TGACGCCATC GTGGTGGTCG AGAACGTCGA ACGTGTTATG
ACGGAAGAAG GCCTTCCGCC GAAGGAAGCG ACGCGCAAAT CCATGGGCCA GATTCAGGGC
GCATTGGTGG GTATCGCGAT GGTACTGTCG GCGGTATTTA TTCCGATGGC CTTCTTTGGC
GGCTCAACCG GGGCAATTTA TCGTCAGTTC TCTATCACCA TCGTATCGGC GATGGCGCTG
TCGGTGCTGG TCGCGCTGAT CCTGACGCCT GCGCTGTGCG CGACGATGCT CAAACCCGTC
GCCAAAGGCG ATCATGGCGA AGGGAAAAAA GGCTTTTTCG GCTGGTTTAA CCGCCTGTTT
GATAAGAGCA CGCATCACTA CACCGATAGC GTAGGCAATA TTCTGCGCAG CACCGGGCGT
TATCTGCTGC TCTATCTCAT TATCGTCGTC GGTATGGCTT ATCTGTTCGT TCGTCTGCCA
AGCTCTTTCT TGCCGGATGA AGACCAGGGC GTATTCCTGA CAATGGTCCA GCTCCCCGCC
GGCGCGACGC AAGAGCGCAC GCAAAAAGTG CTGGATGAGG TCACGGATTA CTATCTGAAC
AAAGAGAAAG CCAACGTTGA ATCGGTATTC GCCGTCAACG GCTTCGGTTT TGCAGGGCGC
GGTCAGAATA CCGGTATTGC ATTCGTGTCG TTGAAAGACT GGGCCGATCG TCCAGGCGAA
AAAAACAAGG TTGAAGCGAT TACCCAGCGG GCAACCGCAG CGTTTTCACA AATTAAAGAT
GCGATGGTCT TCGCCTTTAA CCTACCGGCG ATTGTTGAAC TGGGCACCGC AACCGGGTTT
GACTTCGAGT TGATTGACCA GGCGGGACTT GGTCATGAAA AACTCACCCA GGCACGTAAT
CAGTTGTTCG GCGAGGTGGC GAAATATCCT GATCTGCTGG TCGGCGTTCG ACCTAACGGT
CTGGAAGATA CGCCGCAGTT TAAAATCGAT ATCGACCAGG AAAAAGCTCA GGCGCTGGGC
GTGTCTATTA GCGACATTAA TACCACACTG GGCGCAGCAT GGGGCGGCAG CTATGTAAAC
GACTTTATCG ATCGCGGTCG TGTGAAGAAA GTTTACGTGA TGTCCGAAGC GAAATACCGC
ATGTTGCCGG ATGATATTAA CGACTGGTAC GTTCGTGGTA GCGATGGTCA GATGGTGCCG
TTCTCCGCAT TCTCCTCTTC CCGCTGGGAA TATGGTTCGC CGCGTCTGGA ACGCTATAAC
GGTCTGCCTT CGATGGAAAT TCTGGGTCAG GCGGCGCCAG GCAAGAGTAC TGGTGAAGCG
ATGGCGATGA TGGAGGAACT GGCCAGCAAG CTGCCGTCAG GCATTGGATA TGACTGGACC
GGGATGTCCT ACCAGGAGCG GTTGTCCGGC AACCAGGCCC CTGCCCTGTA TGCTATCTCG
CTGATCGTCG TCTTCCTGTG TCTGGCGGCA TTGTATGAGA GCTGGTCTAT CCCGTTCTCC
GTAATGCTGG TTGTTCCGCT TGGGGTTATC GGCGCGCTGC TGGCTGCGAC CTTCCGCGGA
CTGACTAACG ACGTTTACTT CCAGGTGGGC CTGCTCACAA CCATTGGGTT GTCGGCGAAG
AACGCGATAC TTATCGTCGA ATTCGCCAAA GACTTAATGG ATAAAGAAGG GAAAGGTCTG
GTAGAAGCGA CGCTGGAGGC CGTTCGGATG CGTTTGCGCC CGATTCTGAT GACCTCGTTA
GCGTTCATGC TGGGGGTTAT GCCGCTGGTT ATCAGTTCCG GCGCGGGTTC CGGCGCGCAG
AATGCGGTAG GTACTGGCGT ACTGGGCGGG ATGGTAACGG CAACCGTACT GGCTATTTTC
TTCGTACCGG TCTTCTTCGT GGTGGTACGC CGCCGCTTTA GCCGTAAAAG CGAAGATATT
GAGCATAGTC ATTCGACAGA ACATCGCTGA
 
Protein sequence
MPNFFIDRPI FAWVIAIIIM LAGGLAILKL PVAQYPTIAP PAVTISATYP GADAKTVQDT 
VTQVIEQNMN GIDNLMYMSS NSDSTGTVQI TLTFESGTDA DIAQVQVQNK LQLAMPLLPQ
EVQQQGVSVE KSSSSFLMVV GVINTDGTMT QEDISDYVAA NMKDPISRTS GVGDVQLFGS
QYAMRIWMNP TELTKYQLTP VDVINAIKAQ NAQVAAGQLG GTPPVKGQQL NASIIAQTRL
TSTDEFGKIL LKVNQDGSQV RLRDVAKIEL GGENYDVIAK FNGQPASGLG IKLATGANAL
DTATAIRAEL KKMEPFFPPG MKIVYPYDTT PFVKISIHEV VKTLVEAIIL VFLVMYLFLQ
NFRATLIPTI AVPVVLLGTF AVLAAFGFSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM
TEEGLPPKEA TRKSMGQIQG ALVGIAMVLS AVFIPMAFFG GSTGAIYRQF SITIVSAMAL
SVLVALILTP ALCATMLKPV AKGDHGEGKK GFFGWFNRLF DKSTHHYTDS VGNILRSTGR
YLLLYLIIVV GMAYLFVRLP SSFLPDEDQG VFLTMVQLPA GATQERTQKV LDEVTDYYLN
KEKANVESVF AVNGFGFAGR GQNTGIAFVS LKDWADRPGE KNKVEAITQR ATAAFSQIKD
AMVFAFNLPA IVELGTATGF DFELIDQAGL GHEKLTQARN QLFGEVAKYP DLLVGVRPNG
LEDTPQFKID IDQEKAQALG VSISDINTTL GAAWGGSYVN DFIDRGRVKK VYVMSEAKYR
MLPDDINDWY VRGSDGQMVP FSAFSSSRWE YGSPRLERYN GLPSMEILGQ AAPGKSTGEA
MAMMEELASK LPSGIGYDWT GMSYQERLSG NQAPALYAIS LIVVFLCLAA LYESWSIPFS
VMLVVPLGVI GALLAATFRG LTNDVYFQVG LLTTIGLSAK NAILIVEFAK DLMDKEGKGL
VEATLEAVRM RLRPILMTSL AFMLGVMPLV ISSGAGSGAQ NAVGTGVLGG MVTATVLAIF
FVPVFFVVVR RRFSRKSEDI EHSHSTEHR