Gene SeD_A0403 details

Gene Information

• Locus tag: SeD_A0403
• Symbol: prpE
• ID: 6871133
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
• Kingdom: Bacteria
• Replicon accession: NC_011205
• Strand: +
• Start bp: 424986
• End bp: 426872
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 642783635
• Product: propionyl-CoA synthetase
• Protein accession: YP_002214322
• Protein GI: 198245504
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
• TIGRFAM ID: [TIGR02316] propionate--CoA ligase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.00000000502757
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTCTTTTA GCGAATTTTA TCAGCGTTCC ATTAACGAAC CGGAGGCGTT CTGGGCCGAG 
CAGGCCCGGC GTATCGACTG GCGACAGCCG TTTACGCAGA CGCTGGATCA TAGCCGCCCA 
CCGTTTGCCC GCTGGTTTTG CGGCGGCACC ACTAACTTAT GTCATAACGC CGTCGACCGC 
TGGCGGGATA AACAGCCGGA GGCGCTGGCG CTGATTGCCG TCTCATCAGA GACCGATGAA 
GAGCGCACAT TTACCTTCAG CCAGTTGCAT GATGAAGTCA ACATTGTGGC CGCCATGTTG 
CTGTCGCTGG GCGTGCAGCG TGGCGATCGC GTATTGGTCT ATATGCCGAT GATTGCCGAA 
GCGCAGATAA CCCTGCTGGC CTGCGCGCGC ATTGGCGCGA TCCATTCGGT GGTCTTTGGC 
GGTTTTGCCT CGCACAGCGT GGCGGCGCGC ATTGACGATG CCAGACCGGC GCTGATTGTG 
TCGGCGGATG CCGGAGCGCG GGGCGGTAAA ATCCTGCCGT ATAAAAAGCT GCTTGATGAC 
GCTATTGCGC AGGCGCAGCA TCAGCCGAAA CACGTTCTGC TGGTGGACAG AGGGCTGGCG 
AAAATGGCGT GGGTGGATGG GCGCGATCTG GATTTTGCCA CGTTGCGCCA GCAGCATCTC 
GGCGCGAGCG TGCCGGTGGC GTGGCTGGAA TCCAATGAAA CCTCGTGCAT TCTTTACACC 
TCCGGCACTA CCGGCAAACC GAAAGGCGTC CAGCGCGACG TCGGCGGTTA TGCAGTGGCG 
CTGGCAACCT CGATGGACAC CATTTTTGGC GGCAAGGCGG GCGGCGTATT CTTTTGCGCA 
TCGGATATCG GCTGGGTCGT CGGCCACTCC TATATCGTTT ACGCGCCGTT GCTGGCAGGC 
ATGGCGACTA TTGTTTACGA AGGACTGCCG ACGTACCCGG ACTGCGGGGT CTGGTGGAAA 
ATTGTCGAGA AATACCAGGT TAACCGGATG TTTTCCGCCC CGACCGCGAT TCGCGTGCTG 
AAAAAATTCC CGACGGCGCA AATCCGCAAT CACGATCTCT CCTCGCTGGA GGCGCTTTAT 
CTGGCCGGTG AGCCGCTGGA CGAGCCGACG GCCAGTTGGG TGACGGAGAC GCTGGGTGTG 
CCGGTTATCG ACAATTATTG GCAGACGGAG TCCGGCTGGC CGATCATGGC GCTGGCCCGC 
GCGCTGGACG ACAGGCCGTC GCGTCTGGGA AGTCCCGGAG TGCCGATGTA CGGTTATAAC 
GTCCAGCTAC TCAATGAAGT CACCGGCGAA CCTTGCGGCA TAAATGAAAA GGGGATGCTG 
GTGATCGAAG GGCCGCTGCC GCCGGGCTGT ATTCAGACTA TCTGGGGCGA CGATGCGCGT 
TTTGTGAAGA CTTACTGGTC GCTGTTTAAC CGTCAGGTTT ATGCCACTTT CGACTGGGGA 
ATCCGCGACG CCGAGGGGTA TTACTTTATT CTGGGCCGTA CCGATGATGT GATTAATATT 
GCGGGTCATC GGCTGGGGAC GCGAGAAATA GAAGAAAGTA TCTCCAGCTA CCCGAACGTA 
GCGGAAGTGG CGGTAGTGGG GATAAAAGAC GCTCTGAAAG GGCAGGTAGC GGTGGCGTTT 
GTCATTCCGA AGCAGAGCGA TACGCTGGCG GATCGCGAGG CGGCGCGCGA CGAGGAAAAC 
GCGATTATGG CGCTGGTGGA CAACCAGATC GGCCACTTTG GTCGTCCGGC GCATGTCTGG 
TTTGTTTCGC AGCTTCCCAA AACGCGTTCC GGAAAGATGC TTCGCCGCAC GATCCAGGCG 
ATCTGCGAAG GCCGCGATCC GGGCGATCTG ACAACCATTG ACGATCCCGC GTCGTTGCAG 
CAAATTCGCC AGGCGATCGA GGAATAG 

 

Protein sequence

MSFSEFYQRS INEPEAFWAE QARRIDWRQP FTQTLDHSRP PFARWFCGGT TNLCHNAVDR 
WRDKQPEALA LIAVSSETDE ERTFTFSQLH DEVNIVAAML LSLGVQRGDR VLVYMPMIAE 
AQITLLACAR IGAIHSVVFG GFASHSVAAR IDDARPALIV SADAGARGGK ILPYKKLLDD 
AIAQAQHQPK HVLLVDRGLA KMAWVDGRDL DFATLRQQHL GASVPVAWLE SNETSCILYT 
SGTTGKPKGV QRDVGGYAVA LATSMDTIFG GKAGGVFFCA SDIGWVVGHS YIVYAPLLAG 
MATIVYEGLP TYPDCGVWWK IVEKYQVNRM FSAPTAIRVL KKFPTAQIRN HDLSSLEALY 
LAGEPLDEPT ASWVTETLGV PVIDNYWQTE SGWPIMALAR ALDDRPSRLG SPGVPMYGYN 
VQLLNEVTGE PCGINEKGML VIEGPLPPGC IQTIWGDDAR FVKTYWSLFN RQVYATFDWG 
IRDAEGYYFI LGRTDDVINI AGHRLGTREI EESISSYPNV AEVAVVGIKD ALKGQVAVAF 
VIPKQSDTLA DREAARDEEN AIMALVDNQI GHFGRPAHVW FVSQLPKTRS GKMLRRTIQA 
ICEGRDPGDL TTIDDPASLQ QIRQAIEE