Gene SeAg_B3139 details

Gene Information

• Locus tag: SeAg_B3139
• Symbol: recD
• ID: 6792534
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Agona str. SL483
• Kingdom: Bacteria
• Replicon accession: NC_011149
• Strand: -
• Start bp: 3061705
• End bp: 3063540
• Gene Length: 1836 bp
• Protein Length: 611 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 642777294
• Product: exonuclease V subunit alpha
• Protein accession: YP_002147901
• Protein GI: 197251435
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
• TIGRFAM ID: [TIGR01447] exodeoxyribonuclease V, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAATCC AGGAGCGGTT GCTGGAGGCC GTTGAACAAA AACTCTTACG GCCCATTGAT 
GCCCAGTTTG CTTTAACCGT CGCCGGTAAC GACGATCCCG CCGTGACGCT GGCGGCAGCG 
CTGCTTAGTC ATGACGCAGG TGAAGGTCAC GTGTGTCTGC CGTTGTCGCG TTTAACGTTA 
ACGGAGGAGG CGCATCCCTT ACTGGTCGCC TGGATAAGCG AAACGGCTAC GCCAATCGAC 
TGGAAAAAGC GGTTACTGGC GTCTGCGGCG GTTAGCTGCG GCGATAGCCC CGCGCCGTTA 
ATTCTGTGCG GCGATCGCCT CTACCTGAAT CGCATGTGGT GCAACGAGCG TACGGTTGCG 
CGCTTTTTTA ACGAGGTTAA CCAGGCCATC GCCGTAGATG AAGATCAGTT ATCCCGTATT 
CTGGACGCGC TATTCCCTCC GACAGACGAG GTGAACTGGC AAAAGGTGGC CGCCGCCGTA 
GCGCTAACTC GCCGTATCTC CGTGATTTCA GGCGGTCCCG GCACCGGTAA AACCACCACC 
GTCGCGAAGC TGCTGGCGGC ATTAATTCAA ATGGCGGATG GCGAACGTTG CCGTATCCGG 
CTGGCAGCGC CGACCGGGAA AGCGGCCGCA CGCCTGACGG AGTCGCTCGG CGCGGCGTTG 
CGTCAGCTTC CTCTTACCGA TGCGCAGAAA AAGCGTATAC CGGAGGACGC CAGTACGCTG 
CACCGACTGC TGGGCGCACA GCCCGGCAGT CAGCGATTAC GCCATCATGC GGGCAACCCG 
CTGCATCTGG ACGTGCTGGT GGTCGATGAG GCATCAATGA TTGATTTGCC GATGATGTCA 
CGTTTGATTG ACGCTCTGCC GCCGCACGGG CGGGTCATTT TTCTTGGCGA TCGCGATCAG 
TTGGCATCCG TTGAGGCGGG CGCTGTGTTG GGCGATATTT GCGCCTATGT CAACGCAGGG 
TTTACGGCGG AACGCGCCCG ACAGCTAAGT CGACTAACAG GGAGCGCCAT TCCGGCGGGG 
GCCGGAACGC AAGCCGCGTC TTTACGCGAT AGCCTCTGTT TGTTGCAAAA GAGCTACCGT 
TTCGGCAGCG ATTCTGGCAT CGGCAAGCTG GCGGCGGCGA TTAACTGCGG CGACAGGTCG 
GCAATCCAGG CTGTTTTTCA GCAGGGGTTT AGCGATATAG AGAAGCGTAC ATTGCAAAGC 
AGCGACGATT ATGCCGGGAT GCTGGATGAA GCGCTGGCGG GCTATGGGCG CTACCTGCGG 
TTGCTGCATG AGAAAGCGAC GCCGGAGGCA ATCCTGCAGG CTTTCAATGA GTATCAACTG 
CTTTGCGCGC TGCGTGAAGG CCCATTTGGC GTGAGGGGAC TGAATGACCG CATTGAGCAG 
GCGATGGTGC AGCAACGAAA AATTCAGCGG CATCCGCACT CTCGCTGGTA TGAAGGGCGT 
CCGGTAATGA TTGCGCGCAA CGATAGCGCG TTGGGGCTAT TTAACGGCGA TATTGGTATT 
GCGCTCGATC GCGGACAGGG GTTACGCGTC TGGTTTGTGA TGCCGGACGG CACCATCAAG 
TCCGTTCAGC CCAGCCGTCT GCCGGAACAT GATACAACCT GGGCGATGAC GGTACATAAA 
TCACAGGGGT CTGAATTTGA TCACGCCGCG CTGATTTTAC CCAGCCAACG TTCGCCGGTC 
GTGACGCGGG AGCTGGTGTA TACCGCGGTT ACGCGGGCGC GGCGGCGATT ATCGCTGTAT 
GCCGATGAAC GGATCCTGGC AGGCGCGATT GTGACGCGAA CGGAACGGCG CAGCGGGTTA 
GCCACCTTAT TTGATGAAGT CAGTCGTACC GAATAA 

 

Protein sequence

MTIQERLLEA VEQKLLRPID AQFALTVAGN DDPAVTLAAA LLSHDAGEGH VCLPLSRLTL 
TEEAHPLLVA WISETATPID WKKRLLASAA VSCGDSPAPL ILCGDRLYLN RMWCNERTVA 
RFFNEVNQAI AVDEDQLSRI LDALFPPTDE VNWQKVAAAV ALTRRISVIS GGPGTGKTTT 
VAKLLAALIQ MADGERCRIR LAAPTGKAAA RLTESLGAAL RQLPLTDAQK KRIPEDASTL 
HRLLGAQPGS QRLRHHAGNP LHLDVLVVDE ASMIDLPMMS RLIDALPPHG RVIFLGDRDQ 
LASVEAGAVL GDICAYVNAG FTAERARQLS RLTGSAIPAG AGTQAASLRD SLCLLQKSYR 
FGSDSGIGKL AAAINCGDRS AIQAVFQQGF SDIEKRTLQS SDDYAGMLDE ALAGYGRYLR 
LLHEKATPEA ILQAFNEYQL LCALREGPFG VRGLNDRIEQ AMVQQRKIQR HPHSRWYEGR 
PVMIARNDSA LGLFNGDIGI ALDRGQGLRV WFVMPDGTIK SVQPSRLPEH DTTWAMTVHK 
SQGSEFDHAA LILPSQRSPV VTRELVYTAV TRARRRLSLY ADERILAGAI VTRTERRSGL 
ATLFDEVSRT E