Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeAg_B3020 |
Symbol | |
ID | 6794102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
Kingdom | Bacteria |
Replicon accession | NC_011149 |
Strand | - |
Start bp | 2950123 |
End bp | 2951667 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642777186 |
Product | type III secretion outer membrane pore, YscC/HrcC family |
Protein accession | YP_002147795 |
Protein GI | 197248412 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCTAC AGCTAAAGGA GCCTGTCATT GTTAGCAAAA TGGCGGCACG AAAAAAAATT ACGGGCAACT TTGAGTTTCA CGATCCTAAC GCATTACTGG AGAAGCTTTC CCTACAACTG GGGCTGATTT GGTATTTCGA TGGGCAGGCT ATCTATATTT ATGACGCCAG TGAAATGCGC AATGCCGTGG TTTCTTTACG CAACGTCTCA CTCAATGAGT TCAACAATTT TCTAAAACGC TCAGGTTTAT ATAACAAAAA TTACCCGCTA CGTGGCGATA ACCGTAAAGG AACATTCTAT GTTTCAGGGC CACCCGTCTA TGTTGATATG GTGGTCAACG CCGCCACCAT GATGGACAAG CAAAACGATG GTATTGAGCT GGGACGCCAG AAAATAGGGG TGATGCGTCT GAACAATACC TTCGTGGGCG ATCGTACCTA CAATCTGCGC GATCAGAAAA TGGTTATCCC CGGTATTGCC ACGGCCATTG AAAGGTTGTT GCAGGGAGAA GAGCAACCTT TAGGTAATAT TGTCAGTAGC GAACCCCCGG CGATGCCAGC GTTTTCAGCG AATGGAGAAA AAGGTAAAGC AGCAAATTAT GCCGGTGGCA TGAGTCTGCA GGAAGCTTTA AAGCAAAATG CCGCGGCGGG CAATATTAAA ATCGTGGCCT ATCCGGATAC CAACAGTTTG TTAGTAAAGG GAACGGCTGA GCAGGTGCAT TTTATCGAAA TGCTGGTTAA AGCGCTGGAT GTCGCCAAAC GTCACGTAGA ATTATCCCTG TGGATTGTCG ATCTTAATAA AAGCGATCTG GAGCGTTTGG GCACTTCATG GAGCGGCAGC ATAACTATTG GGGACAAACT TGGCGTGTCA TTAAACCAGT CTTCAATAAG TACCCTCGAT GGCAGTCGAT TCATCGCCGC GGTAAATGCG TTAGAAGAGA AGAAACAGGC GACGGTGGTT TCGCGCCCGG TATTACTGAC TCAGGAAAAT GTTCCCGCTA TTTTTGATAA CAACAGAACG TTTTACACCA AGCTGATTGG GGAACGTAAT GTGGCGCTTG AGCATGTAAC ATACGGAACA ATGATCCGAG TGCTGCCCCG TTTTTCCGCA GATGGTCAGA TAGAAATGTC GCTGGACATT GAAGATGGCA ACGATAAGAC GCCGCAATCC GATACTACCA CCTCCGTAGA TGCGTTACCC GAAGTCGGGC GAACGTTAAT TAGCACTATT GCGAGAGTTC CGCACGGAAA AAGTTTGCTG GTCGGTGGTT ATACACGGGA TGCAAATACC GATACTGTCC AAAGTATTCC GTTTTTAGGC AAATTACCGC TTATTGGTAG CCTGTTCCGT TATTCCAGTA AGAATAAAAG TAATGTTGTT CGTGTGTTCA TGATTGAACC AAAAGAAATT GTCGACCCGT TAACGCCGGA TGCCAGCGAA TCGGTAAACA ATATTCTGAA ACAAAGCGGT GCCTGGAGTG GGGACGATAA GTTACAGAAA TGGGTTCGTG TTTATCTGGA TAGAGGTCAG GAGGCAATTA AATGA
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Protein sequence | MALQLKEPVI VSKMAARKKI TGNFEFHDPN ALLEKLSLQL GLIWYFDGQA IYIYDASEMR NAVVSLRNVS LNEFNNFLKR SGLYNKNYPL RGDNRKGTFY VSGPPVYVDM VVNAATMMDK QNDGIELGRQ KIGVMRLNNT FVGDRTYNLR DQKMVIPGIA TAIERLLQGE EQPLGNIVSS EPPAMPAFSA NGEKGKAANY AGGMSLQEAL KQNAAAGNIK IVAYPDTNSL LVKGTAEQVH FIEMLVKALD VAKRHVELSL WIVDLNKSDL ERLGTSWSGS ITIGDKLGVS LNQSSISTLD GSRFIAAVNA LEEKKQATVV SRPVLLTQEN VPAIFDNNRT FYTKLIGERN VALEHVTYGT MIRVLPRFSA DGQIEMSLDI EDGNDKTPQS DTTTSVDALP EVGRTLISTI ARVPHGKSLL VGGYTRDANT DTVQSIPFLG KLPLIGSLFR YSSKNKSNVV RVFMIEPKEI VDPLTPDASE SVNNILKQSG AWSGDDKLQK WVRVYLDRGQ EAIK
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