Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeAg_B2003 |
Symbol | rne |
ID | 6795689 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
Kingdom | Bacteria |
Replicon accession | NC_011149 |
Strand | + |
Start bp | 1942569 |
End bp | 1945772 |
Gene Length | 3204 bp |
Protein Length | 1067 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642776227 |
Product | ribonuclease E |
Protein accession | YP_002146858 |
Protein GI | 197250329 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000122213 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGAA TGTTAATCAA CGCGACTCAG CAGGAAGAGT TGCGCGTCGC CCTTGTAGAT GGGCAGCGTC TGTACGATCT GGATATAGAA AGCCCCGGAC ACGAGCAGAA AAAAGCGAAC ATCTATAAAG GCAAAATTAC CCGTATTGAA CCGAGCCTGG AAGCGGCTTT TGTTGATTAC GGCGCAGAAC GCCACGGTTT CCTCCCGTTA AAAGAAATTG CCCGCGAATA TTTCCCCGCT AACTACAGCG CTCATGGTCG CCCGAACATT AAAGACGTGT TACGCGAAGG CCAGGAAGTC ATTGTTCAAA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCGTTAAC CACCTTTATC AGTCTGGCGG GCAGCTACCT GGTGCTGATG CCGAATAACC CGCGCGCGGG TGGTATCTCC CGTCGCATTG AAGGCGACGA TCGTACCGAG TTAAAAGAAG CGTTGGCCAG CCTGGAACTT CCTGAAGGGA TGGGGCTTAT CGTACGTACC GCGGGCGTGG GTAAATCCGC CGAAGCGTTG CAGTGGGATT TAAGCTTCCG CCTGAAACAC TGGGAAGCCA TTCAGAAAGC CGCTGAAAGC CGTCCCGCGC CGTTCCTGAT CCATCAGGAA AGCAACGTCA TCGTACGCGC GTTTCGCGAC TATCTGCGTC AGGATATCGG TGAAATCCTG ATCGACAATC CAAAAGTGAT GGAAATGGCG CGTCAGCATA TCGCCGCGTT GGGCCGCCCG GATTTTAGCA GCAAAATTAA GCTGTACACC GGTGAAATCC CGTTGTTCAG CCATTACCAG ATCGAATCGC AGATCGAGTC AGCGTTCCAG CGTGAAGTGC GCCTGCCCTC CGGCGGCTCC ATCGTCATTG ACAGTACCGA AGCGTTAACC GCCATCGATA TCAACTCCGC CCGCGCGACT CGCGGCGGCG ATATCGAAGA AACCGCGTTC AACACCAATC TCGAAGCGGC CGATGAGATT GCCCGTCAGT TGCGTCTGCG CGACCTGGGC GGCCTGATCG TTATCGACTT TATCGATATG ACGCCGGTAC GTCACCAGCG CGCGGTAGAA AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGGGCGCGTA TTCAGATTAG CCATATTTCC CGCTTCGGCC TGCTCGAAAT GTCGCGTCAG CGCCTGAGCC CGTCGCTGGG CGAATCCAGC CATCACGTGT GTCCGCGCTG TAGCGGTACC GGCACCGTGC GCGATAACGA ATCTCTGTCG CTGTCCATTC TGCGCCTGAT TGAAGAAGAA GCGCTGAAAG AGAATACGCA GGAAGTCCAT GCCATTGTTC CGGTGCCGAT CGCCTCTTAT CTGCTTAACG AAAAACGGAC GGCAGTTAAC GCTATTGAGA CGCGTCAGGA TGGCGTCCGC TGTGTCATCG TCCCGAACGA TCAGATGGAA ACGCCGCACT ATTCCGTGCT GCGCGTACGC AAAGGGGAAG AAACGCCGAC CCTGAGCTAC ATGCTGCCGA AGCTGCACGA AGAAGCGATG GCGCTGCCTT CTGAAGAAGA GTACGCCGAG CGTAAACGCC CGGAACAGCC TGCGCTGGCG ACATTCGCTA TGCCAGATGT GCCTCCAGCG CCGACGCCTG TCGAACCGGC GGTTAGCGTC GCCACGGCGA AAAAGGATAA TGTTGCCGCC GCGCAGCCTG CCCAGCCGGG TCTGTTTAGC CGCTTCCTTA ACGCGCTGAA ACAACTGTTC AGCGGTGAAG AAACGAAAAC CGTCGAAACA GCCGCGCCGA AAGCGGAAGA AAAAGCGGAG CGTCAGCAGG ATCGACGCAA GCCACGGCAG AATAACCGTC GCGATCGTAA CGAACGCCGC GACACCCGTG ATAACCGTGC CGGACGTGAC GGCGGCGAGA GCCGCGACGA TAATCGTCGT AACCGTCGCC AGGCGCAGCA GCAAAATGCG GAAACGCGCG ATACCCGCCA GCAGGAAACG GCGGAAAAAG TGAAAACCGG CGATGAGCAG CAACAGACGC CGCGTCGCGA ACGCAGCCGC CGCCGCAATG ATGACAAGCG CCAGGCGCAG CAGGAAGTAA AAGCGCTTAA CCGCGAAGAA CAGCCTGTCC AGGAGACCGA GCAGGAAGAA CGCGTTCAGC AGGTTCAGCC GCGCCGCAAG CAGCGTCAGC TTAATCAGAA AGTCCGCTTT ACCAACAGCG CAGTGGTTGA AACGGTTGAC ACGCCGGTCG TCGTCGACGA ACCACGCCCG GTTGAAAACG TTGAACAGCC CGTTCCAGCG CCGCGTACCG AGCTGGCGAA AGTTGATTTA CCTGTCGTTG CCGATATCAC GCCGGAGCAG GATGATAGCG TAGAACCTCG CGATAATACC GGTATGCCGC GTCGCTCCCG CCGTTCTCCG CGCCACCTGC GCGTAAGCGG TCAGCGTCGC CGTCGCTATC GTGACGAGCG CTACCCGACA CAATCGCCAA TGCCGTTAAC CGTCGCCTGC GCGTCGCCGG AAATGGCATC CGGTAAAGTC TGGATCCGCT ACCCGATTGT CCGTCCGCAG GAAACGCAGG TTGTTGAAGA GCAGCGTGAA GCAGATCTGG CGCTGCCACA ACCGGTTGTC GCTGAACAGC AGGTTATCGC TGCGACCGTA GCGCTCGAAC CACAAGCGTC GGTACAGGCG GTAGAAAACG TTGCCGTTGA GCCGCATACT GTCGCCGAAC CACAGGCGCC GGAAGTCGTC GAGGTCGAGA CAACGCATCC GGAAGTCATT GCCGCGCCAG TTGATGAACA GCCGCAACTG ATTGCCGAAA GCGATACGCC GGTGGCGCAA GAGGTTATTG CTGACGCCGA ACCGGTAGCA GAAACCGCCG ACGCGTCCAT TACGGTGGCT GAAAACGTAG CTGATGTTGT CGTTGTCGAG CCAGAAGAAG AGACAAAAGC GGAAGCGGCT GTTGTGGAGC ACACGGCAGA AGAAACCGTT ATCGCACCGG CCCAGGTGGT GGAAAAGCCG CAGGACGTTG TCTGCGTTGA CGATCATAAC CACGCCAGCG CGCCGATGAC GCGTGCGCCA GCGCCGGAAT ATGTGCCGGA AACCCCGCAC CATAGCGACT GGCAGCGCCC TTCCTTCCAC TTTGAAGGTA AAGGCGCAGC AGGCGGACAC AGCGCCACAC GTCACGCCAG CGCCCCGGCA ACACGACCAC AGCCGGTAGA ATGA
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Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL QWDLSFRLKH WEAIQKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVMEMA RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRTAVN AIETRQDGVR CVIVPNDQME TPHYSVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEYAE RKRPEQPALA TFAMPDVPPA PTPVEPAVSV ATAKKDNVAA AQPAQPGLFS RFLNALKQLF SGEETKTVET AAPKAEEKAE RQQDRRKPRQ NNRRDRNERR DTRDNRAGRD GGESRDDNRR NRRQAQQQNA ETRDTRQQET AEKVKTGDEQ QQTPRRERSR RRNDDKRQAQ QEVKALNREE QPVQETEQEE RVQQVQPRRK QRQLNQKVRF TNSAVVETVD TPVVVDEPRP VENVEQPVPA PRTELAKVDL PVVADITPEQ DDSVEPRDNT GMPRRSRRSP RHLRVSGQRR RRYRDERYPT QSPMPLTVAC ASPEMASGKV WIRYPIVRPQ ETQVVEEQRE ADLALPQPVV AEQQVIAATV ALEPQASVQA VENVAVEPHT VAEPQAPEVV EVETTHPEVI AAPVDEQPQL IAESDTPVAQ EVIADAEPVA ETADASITVA ENVADVVVVE PEEETKAEAA VVEHTAEETV IAPAQVVEKP QDVVCVDDHN HASAPMTRAP APEYVPETPH HSDWQRPSFH FEGKGAAGGH SATRHASAPA TRPQPVE
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