Gene SeAg_B0962 details

Gene Information

• Locus tag: SeAg_B0962
• Symbol: cydD
• ID: 6793312
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Agona str. SL483
• Kingdom: Bacteria
• Replicon accession: NC_011149
• Strand: -
• Start bp: 948690
• End bp: 950456
• Gene Length: 1767 bp
• Protein Length: 588 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 642775233
• Product: cysteine/glutathione ABC transporter membrane/ATP-binding component
• Protein accession: YP_002145875
• Protein GI: 197247456
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
• TIGRFAM ID: [TIGR02857] thiol reductant ABC exporter, CydD subunit

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.0420989
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAAA CCCGTCAAAA AGAGCTGACC CGCTGGTTAA AACAGCAAAG CGTAATCTCC 
CAACGGTGGT TGAATATTTC CCGCCTGTTG GGGTTCATGA GTGGCGTATT AATTGTCGCT 
CAGGCCTGGA TCATGGCGCG TATCCTGCAA CATATGATCA TGGAGAACAT TCCACGGGAA 
GCGCTGTTGC TCCCTTTTAT CCTGCTGATA CTGGTCTTTG TCCTCCGCGC CTGGGTGGTG 
TGGTTGCGCG AGCGCGTCGG TTTTCATGCC GGACAACATA TTCGCTTTGA GATCCGCCGT 
CAGGTGTTGG ATCGTCTGCA GCAAGCCGGC CCAGCCTGGA TTCAGGGCAA GCCCGCCGGT 
AGCTGGGCGA CGCTGGTGTT GGAGCAGATT GACGATATGC ATGACTATTA TGCGCGCTAT 
CTGCCGCAAA TGGCGCTTGC CGTTTGCGTA CCGCTCTTAA TCGTGGCGGC GATTTTCCCG 
TCAAATTGGG CGGCGGCGCT GATTCTGCTG GGCACTGCCC CGCTCATTCC CCTATTTATG 
GCGATGGTGG GAATGGGCGC GGCTGACGCC AACCGCCGCA ATTTCCTGGC GCTTGCCCGG 
CTAAGCGGCC ATTTTCTTGA CCGTCTGCGC GGGATGGAAA CGCTGCGAAT TTTCGGTCGT 
GGAGAAGCGG AAACCGAGAG CATTCGCGCA GCATCGCAGG ATTTTCGTCA GCGCACGATG 
GAAGTACTGC GCCTCGCATT TTTATCTTCC GGCGTGCTGG AATTTTTCAC CTCGCTTTCT 
ATTGCGCTGG TCGCCGTTTA TTTTGGCTTC TCTTACCTGG GCGAGCTGAA CTTTGGTCAT 
TACGGTACCG GTGTGACGCT CGCCGCCGGG TTCCTCGCCT TGATCCTCGC GCCGGAGTTT 
TTCCAGCCAT TACGCGACCT CGGCACGTTT TATCATGCTA AGGCGCAGGC GATTGGCGCG 
GCGGATAGTC TGAAGACGTT TCTGGAAACG CCCCTCGCCC ACCCGGCGCG CGGCGAAGTT 
GAGCTGGCGG AAAACGAGCC TGTAACCATT GACGCAGTCA ATCTTATTAT CACCTCGCCA 
GAAGGCAAAA CGCTTGCCGG GCCGCTGAAT TTCTCATTAG CGGCAGGAGA ACGCGCCGTC 
CTGGTAGGAC GCAGCGGTTC CGGTAAAAGC ACTCTGTTGA ATGTATTATC CGGTTTTCTC 
TCCTATCAGG GATCTTTGCG TATTAACGGT GTCGAGCTTC GCGATCTCTC GCCGGAATCC 
TGGCGCCAGC ATCTCTCCTG GGTTGGGCAA AACCCGCAAT TACCTGCGGC GACGCTACGC 
GAAAATGTAT TACTGGCGCG CCCGGAGGCC AGCGAGCAGG AACTTTATGC CGCGCTTGAC 
GCCGCATGGG TAAGCGAGTT TTTACCGCTG CTGCCGCAAG GAGTAGACAC CCCGCTCGGC 
AATCATGCCA GCAGACTTTC CGTCGGCCAG GCACAGCGTG TAGCGGTCGC CCGTGCGCTA 
CTTAATCCCT GTCAACTGCT ACTGCTGGAT GAACCGGCGG CAAGCCTGGA CGCTCACAGC 
GAGCAACGCG TCATGCAGGC GTTAAAAGCG GCGTCAAAAC GCCAGACCAC ATTAATGGTG 
ACGCATCAGT TGGAAGATCT CGCCGACTGG GACGCTATCT GGGTTATGCA AGATGGCGCG 
ATTGTCGAAC AAGGCAGTTA TGCCGAACTC AGCGCCGCCA ACGGCGCTTT TGCGACGTTA 
TTGGCTCATC GTCAGGAGGA TATTTAA 

 

Protein sequence

MNKTRQKELT RWLKQQSVIS QRWLNISRLL GFMSGVLIVA QAWIMARILQ HMIMENIPRE 
ALLLPFILLI LVFVLRAWVV WLRERVGFHA GQHIRFEIRR QVLDRLQQAG PAWIQGKPAG 
SWATLVLEQI DDMHDYYARY LPQMALAVCV PLLIVAAIFP SNWAAALILL GTAPLIPLFM 
AMVGMGAADA NRRNFLALAR LSGHFLDRLR GMETLRIFGR GEAETESIRA ASQDFRQRTM 
EVLRLAFLSS GVLEFFTSLS IALVAVYFGF SYLGELNFGH YGTGVTLAAG FLALILAPEF 
FQPLRDLGTF YHAKAQAIGA ADSLKTFLET PLAHPARGEV ELAENEPVTI DAVNLIITSP 
EGKTLAGPLN FSLAAGERAV LVGRSGSGKS TLLNVLSGFL SYQGSLRING VELRDLSPES 
WRQHLSWVGQ NPQLPAATLR ENVLLARPEA SEQELYAALD AAWVSEFLPL LPQGVDTPLG 
NHASRLSVGQ AQRVAVARAL LNPCQLLLLD EPAASLDAHS EQRVMQALKA ASKRQTTLMV 
THQLEDLADW DAIWVMQDGA IVEQGSYAEL SAANGAFATL LAHRQEDI