| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B0233 |
|---|
| Symbol | |
|---|
| ID | 6795191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | + |
|---|
| Start bp | 239844 |
|---|
| End bp | 242501 |
|---|
| Gene Length | 2658 bp |
|---|
| Protein Length | 885 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642774536 |
|---|
| Product | fimbrial usher protein |
|---|
| Protein accession | YP_002145200 |
|---|
| Protein GI | 197247605 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.516859 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCACT ATAAAAAATT TCGTCTGAGC ACGCTTGCGG CCGTGGTGGG TATTGTTCTG
GCTGTCGGTC CGGAAAATAG CTACGCGGAA GCGCCCATTC AATTTAATAC CCGATTTCTT
GATGTTAAAG ATGATGCCAG CCTGGATCTC TCCCGTTTTT CCCGTAAAGG CTACATTATG
CCGGGGAGCT ATCATCTCCA GGTGCTGGTC AATCAGAGTC AAATTGCCCA GGATAATATT
ATTACGTATT CCGTTGATAA TAACGATCCT GATAATACAT ATCCCTGTTT ATCGCCTGAA
CTGGTATCGC TGCTGGGGTT AAAACCTGAA ATAGCAGATA AAATGATCTG GATAAATGCC
GGTCAGTGTC TGCAACCAGA ACAACTGGAA GGGATGGAAA CCCAAACGGA TTTAAGCCAG
TCAACGCTGA CGGTGATTAT TCCGCAGGCC TATCTGGAAT ACAGCGATGA AGAGTGGGAT
CCACCTTCCC GCTGGGATGA AGGGATTCCC GGCGTGTTAT TTGACTACAA CGTTAACAGC
CAGTGGCGAC ATGCTGAACA TGATGACGGC GATGAATATG ACATCAGCGG CAACGGCACG
GTGGGTGCCA ACCTCGGCGC GTGGCGTTTG CGCGCGGACT GGCAGGCTAA CTATCGTCAC
GAAAATGACA GCGAAGATAA AGACAACTTT GGCTCCAGTT CCGAACAGAA CTGGGACTGG
AACCGCTATT ACGCCTGGCG GGCGATCCCG CAGCTCCGGG CACAGCTAAC GCTGGGCGAA
GGATCGCTGG AATCCGATAT TTTCGACGGC TTTAACTATG TTGGCGGCAG CCTTATTACC
GACGATCAGA TGTTACCGCC TAATCTGCGC GGCTACGCCC CGGATATATC AGGCGTGGCG
CGCACCAACG CCAAAGTCAC CGTGACCCAG CGCGGGCGGG TGATTTATGA GTCGCAGGTC
CCGGCAGGGC CGTTTCGCAT TCAGGATATT AATGAAACGG TATCCGGCGA TCTACACGTC
AAAATTGAAG AACAAAGCGG TCAGGTGCAG GAATATGACG TCAGCACCGC CTCCATTCCG
TTTCTGACCC GTCCCGGCCA GGTGCGCTAC AAGTTGGCCG CCGGGCGACC GCAGGACTGG
GATCACAATA TGGAAGGCGG CTTTTTCACT TCAGCCGAAG CCTCCTGGGG GATCGCTAAC
GGCTGGTCGC TGTACGGCGG CGCCATCGGC GAGCAGGATT ATCAGGCGCT GGCGTTAGGA
CTGGGGCGCG ATCTGGCGCT GCTGGGCGCG TTTTCCGTCG ATGTCACCCA TTCCCGTGCG
ACGCTGCCAG AGGGTAGCGC CTACGGCGAC GGCACCATTC AGGGTAACTC GTTCCGTGCC
AGCTACGCTA AAGATTTTGA TGATATAGAC AGCCGTCTGA CGTTTGCTGG TTATCGCTTT
TCCGAAGAAA ACTACATGAC GATGGACGAG TTTATCGATA CGCATAATGA CGATAACGAT
CGTCAGCGCA CCGGCCACGA TAAAGAGATG TATACCCTGA CGTACAGCCA GAACTTTTCG
GCAATAAACG TCAACGCCTA TATCAACTAC ACCCATCGCA CCTACTGGAA CCAACCCAAC
CAGGACAGCT ATAACCTGAC GCTGTCGCAC TATTTCGATG TCGGCGAGGT GCGCGGGATC
AGTCTGTCGG TGAACGGTTT TCGCAACGAA TATGACAATG AACGCGATGA CGGCGTGTAC
GTCTCGCTCA GTATTCCGTG GGGCAACAAC CGCACGCTGA GCTACAACGG CTCCTTTAGC
GATGACAACA ACAGCAATCA GGTCGGCTAT TACGAGCGCA TTGACGATCG CAATAACTAC
CAGATCAACG CTGGCCGCGC GGATAACGGC GCGACTCTCG ACGGCTATTA CCGTCATCAA
GCGAGCTATG CCGACATTGA CGTCAGTGCG AACTATCAGG AAGGCGACTA TACCTCCGGC
GGGCTGAACA TCCAGGGCGG CGCGACGCTG ACTGCTAAAG GCGGGGCGCT GCACCGTACC
AGCGTCAACG GCGGCTCGCG GCTGCTGGTG GATGTCGGCG ATGAAGCGAA CGTACCCATC
TCCGGCTACA GCACGCCGGT ATATACCAAC GCGTTTGGTA AAGCCGTCAT TGTTGACGTC
AACGACTACT ACCGCAACCA GGTGAAAATC GACATTACCC AGTTGCCGGA AGACGCGGAA
GCAACCCTCT CCATCGCTCA GGCGACCCTG ACGGAAGGGG CGATCGGTTA TCGCCGCCTG
GAGGTGCTCA GCGGTAAAAA AGCCATGGCC AGTATCCGCC TGCGCGATGG CGGCACGCCG
CCCTTCGGCG CGGAGGTTTA CAACAGTCGC CAGCAACAGT TAGGGATCGT AGGTGAAGAC
GGCAGCGTTT ATCTGATCGG CATTAACCCC GGCGAGCGGT TGCAGGTGAC ATGGGAAGGT
AAAACGCAGT GTGAAGCGGC GTTGCCCGAC CCGCTGCCGG GCGATCTGTT TAGCGGCCTG
CTGCTGCCGT GCATCGGCGA CGCTTCATCA CCTGAGGCAA CGCAGCCCGC AGAGAAACCA
TTACTCCAGC TTCATACGCA GCGGCTGACG TCTTCAACGC AACCCGAAGC GCTCTCTTCT
CGTTATCCAA CACATTGA
|
|---|
| Protein sequence | MAHYKKFRLS TLAAVVGIVL AVGPENSYAE APIQFNTRFL DVKDDASLDL SRFSRKGYIM
PGSYHLQVLV NQSQIAQDNI ITYSVDNNDP DNTYPCLSPE LVSLLGLKPE IADKMIWINA
GQCLQPEQLE GMETQTDLSQ STLTVIIPQA YLEYSDEEWD PPSRWDEGIP GVLFDYNVNS
QWRHAEHDDG DEYDISGNGT VGANLGAWRL RADWQANYRH ENDSEDKDNF GSSSEQNWDW
NRYYAWRAIP QLRAQLTLGE GSLESDIFDG FNYVGGSLIT DDQMLPPNLR GYAPDISGVA
RTNAKVTVTQ RGRVIYESQV PAGPFRIQDI NETVSGDLHV KIEEQSGQVQ EYDVSTASIP
FLTRPGQVRY KLAAGRPQDW DHNMEGGFFT SAEASWGIAN GWSLYGGAIG EQDYQALALG
LGRDLALLGA FSVDVTHSRA TLPEGSAYGD GTIQGNSFRA SYAKDFDDID SRLTFAGYRF
SEENYMTMDE FIDTHNDDND RQRTGHDKEM YTLTYSQNFS AINVNAYINY THRTYWNQPN
QDSYNLTLSH YFDVGEVRGI SLSVNGFRNE YDNERDDGVY VSLSIPWGNN RTLSYNGSFS
DDNNSNQVGY YERIDDRNNY QINAGRADNG ATLDGYYRHQ ASYADIDVSA NYQEGDYTSG
GLNIQGGATL TAKGGALHRT SVNGGSRLLV DVGDEANVPI SGYSTPVYTN AFGKAVIVDV
NDYYRNQVKI DITQLPEDAE ATLSIAQATL TEGAIGYRRL EVLSGKKAMA SIRLRDGGTP
PFGAEVYNSR QQQLGIVGED GSVYLIGINP GERLQVTWEG KTQCEAALPD PLPGDLFSGL
LLPCIGDASS PEATQPAEKP LLQLHTQRLT SSTQPEALSS RYPTH
|
|---|
| |