| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3633 |
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| Symbol | fliA |
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| ID | 4020190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4353770 |
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| End bp | 4354480 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637957694 |
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| Product | flagellar biosynthesis sigma factor |
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| Protein accession | YP_564631 |
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| Protein GI | 91794980 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00869538 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCTCG ATGGTCAATT AGCTTACCAA ACCGTCAGTG AAGAACCTGC GTTACAGCGT
TTATCCGAAG ATCAGTTAAT CGTACAGTAT TTGCCGTTGG TGAAACGTGC AGTGCTGCAA
CTGCGCAGTC ATTGCGGTGC CATGCTGTCA CTTGAGGATA TGGAGCAAAT CGGCATGATG
GCACTTATTG AATCCTCAAG GCGATATCCT GGTGAGTTTG ATAATGGATT TATTTCTTTT
GCGGGGCAGC GAATACGTGG AGCTATTCTG GATGAATTAC GCCGTCAGGA TTGGCGTCCA
AGGCCTGTGC GTCAGCAGGC GCACATTTTG AATGACAAAG TCCGAGAATT GAGCCGAACT
TTAGGACGAG AGCCGACCGA TACTGAGGTT GCGACTGGGC TTGGACTCTC TCCAGAGGCC
TATCGCGAGA GCTTGTACGC CACTCAGGCG GAGTCAATGA AAAGCTTGGA TGAGATGCTG
ACTATTGGCG AGCAACCCGC AGATAAACAC AATGAAGTTG AGCGTTTCAT GCTCAAAAAA
ACCTTGATTA AAGCCATGAC GAAATTAAAT GAAAGAGAAC AGTTAATTCT GTCGCTTTAC
TATCATCATG AACTTAATTT AAAAGAGATT GCATTAACAC TGGGATTGAC TGAGACCCGC
ATTTGCCAGC TTCACAAGCA GGCTGTGGCG AAATTGCAAA GCCTTATATA A
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| Protein sequence | MNLDGQLAYQ TVSEEPALQR LSEDQLIVQY LPLVKRAVLQ LRSHCGAMLS LEDMEQIGMM
ALIESSRRYP GEFDNGFISF AGQRIRGAIL DELRRQDWRP RPVRQQAHIL NDKVRELSRT
LGREPTDTEV ATGLGLSPEA YRESLYATQA ESMKSLDEML TIGEQPADKH NEVERFMLKK
TLIKAMTKLN EREQLILSLY YHHELNLKEI ALTLGLTETR ICQLHKQAVA KLQSLI
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