| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3603 |
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| Symbol | |
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| ID | 4020160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4319763 |
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| End bp | 4321475 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637957664 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_564601 |
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| Protein GI | 91794950 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATAC TCTTAATTGA TGATGACACC ATAGACAGAA TGAATGCTAT TCGCAATCTA
AAAAACTCAG GATTAGCACT CAATATTATT GAAGCTGACA CGGCAAAAAA AGGGCTAGAA
TTGGCCACAT CTGATCAATT CGACGTGGTA TTACTGGATT ATAGCCTGCC GGATATGGAT
GGCTTAGAAG TGTTAACCTT GCTACAGGGG GTGTGGATAA AAAGCACAGC AATCATCATG
CTAAGCCACA GTAGCGATGA AGGTATAGCA TTAAAATGTA TAGAAGCAGG AGCACAAGAT
TTTATCGTTA AGAGCGAGGT GTCTTCAGTC AGGCTCAAGC GAGCCATCTT ACAGGCTCAA
GAGCGTTTTA AGTTGGAGCA AGAATTGCGT TCCAGTTACG TCAAATTACG GCATTTGGCG
GAACGGGATA CCTTGACAGG GCTCACAAAT AGATACTTTT TCGATGAAAC ATTAAAAAAT
GCCATCCCCA CCGCAAAACG GGAGAACAAA AGCTTAGCTC TGATCATGCT GGACTTAGAT
TTTTTTAAGA ATGTTAATGA CACCATGGGG CATGAGGCGG GTGATTATTT ATTACAGGAA
GTGGCACAAC GCTTAAAAAA TCCGCTCAGA GAAGGGGACA CCTTGTGCCG CTTAGGTGGT
GATGAATTTG CAATATTAGT GCAAAACCTT GGCAATATTG TCAACATAGG TCAGCTCATC
GCTCGAGTTT TTGAATCCCT TAAACCAGCG ATGATGATAA ACGGCAATCC AGTCACAGTG
ACGGCGAGTT TAGGTATAGC CACTTATCCT GATTGCGCCA CAGATGCGAA CCAATTAATG
AAATGCGCAG ACGTCGCCAT GTATCGCTCT AAGTCATCTG GTCGAAATCA ATCCCATTTC
TATTCGAAGG CAATCCATGA TGAAGTACTT AAGCGCGTAA CCCTAGAGAG TGATCTGCGT
ATTGCCGTGG AACAACAACA ATTTATTTTA TATTATCAAC CTCAAGTGAG CTATAACGAT
CATCATATCG TGGGTGTAGA AGCCTTGATA CGATGGCAGC ACCCGACGCA AGGGTTGATT
TCACCCATGG TGTTTATTCC TGTGGCTGAA GAGATGGGTT TAATCGATGA GATAGGCCGA
TGGGTGATAG ATATGGCCTG CCAGCAGTTA GCCCAATGGA ATCAAATGAC AAGAAATGAC
GTTAAGCTAT CCATGGCGGC AAACTTATCG GCATTGCAGC TTAATCGCAG CGATTTTTAT
CAATTTGTGA TGAATACCTT GTCTAAGCAT GAAATCCAAC CAGAGCAACT CGAACTTGAA
TTAACCGAAA GCACTATTAA TAGAAGTGAA ATAGCAGATA AGCAGTTAAT GGATCTATCA
CTAGCAGGGA TTAAATTGGC GTTAGATGAT TTTGGCACTG GTTATTCTTC ACTAACTCAC
CTGCAACTCT TACCTTTTGA AGTGATCAAG ATAGATAAAT CTTTCATTCA TAATATTCAC
AGCGAAAGTG ATAGCCATTT TTTACGAGCC ATATGCGCGT TTTCCAAAGC ACTCAACTTT
GAAATTGTGG CCGAAGGGGT GGAAACCGAG TTTCAACGAG GTTTGTGTGA ATCCTTGAAG
GTGGATAGGA TCCAAGGGTA TTATTTTGCC AAGCCTATGC CCGCTAAGGA GCTCGAAGAA
AAATGGATAA ATCGAACTCA CTTGTTTAGA TAA
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| Protein sequence | MKILLIDDDT IDRMNAIRNL KNSGLALNII EADTAKKGLE LATSDQFDVV LLDYSLPDMD
GLEVLTLLQG VWIKSTAIIM LSHSSDEGIA LKCIEAGAQD FIVKSEVSSV RLKRAILQAQ
ERFKLEQELR SSYVKLRHLA ERDTLTGLTN RYFFDETLKN AIPTAKRENK SLALIMLDLD
FFKNVNDTMG HEAGDYLLQE VAQRLKNPLR EGDTLCRLGG DEFAILVQNL GNIVNIGQLI
ARVFESLKPA MMINGNPVTV TASLGIATYP DCATDANQLM KCADVAMYRS KSSGRNQSHF
YSKAIHDEVL KRVTLESDLR IAVEQQQFIL YYQPQVSYND HHIVGVEALI RWQHPTQGLI
SPMVFIPVAE EMGLIDEIGR WVIDMACQQL AQWNQMTRND VKLSMAANLS ALQLNRSDFY
QFVMNTLSKH EIQPEQLELE LTESTINRSE IADKQLMDLS LAGIKLALDD FGTGYSSLTH
LQLLPFEVIK IDKSFIHNIH SESDSHFLRA ICAFSKALNF EIVAEGVETE FQRGLCESLK
VDRIQGYYFA KPMPAKELEE KWINRTHLFR
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