| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3509 |
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| Symbol | |
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| ID | 4020063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4197413 |
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| End bp | 4200541 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637957567 |
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| Product | heavy metal efflux pump CzcA |
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| Protein accession | YP_564507 |
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| Protein GI | 91794856 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAGCTA AAATTATCAG TGCTGCCATT AATCAGCGCG CCATGGTGTT ATTACTGACC
TTAGTTGTCG CCTTGTTAGG CTATCAATCC ATGCGCACTC TGCCCTTGGA TGCATTGCCA
GACTTGTCTG ATGTGCAAGT GATCATCAAG ACCTCCTACC CAGGACAAGC GCCGCAACTG
GTTGAAGATC AAATCACTTA CCCCTTATCC ACTGCCATGT TGGCTGTGCC GGGTGCCAAA
ACAGTGCGCG GCTTCTCCAT GTTTGGCGAC TCCTTCGTCT ACATCATCTT TGAAGATGGC
ACTGACATTT ACTGGGCGCG CTCACGGGTA TTAGAATACC TGTCGCAGAC TCAAGGTCAG
CTGCCACCTG GCGTCACCCC TTCCCTTGGG CCGGACGCTT CTGGGGTCGG CTGGGTATTT
CAATATGCCT TGGTCGACCG CAATGGCACC CATGATCTGG CTCAGCTGAG ATCCCTGCAA
GACTGGTTCT TAAAACTTGA GCTGCAAAGC GTCGAAGGCG TGTCGGAAGT GGCGACCATA
GGCGGGATGG AACAAGCCTA TCAAGTGGTG GTCGACCCCC ATAAACTGGC GCTGTACCAA
ATTGACTTGT CCACCATACA AAATGCCTTA CGGGATTCGA ATAGTTCGGT GGGCGGCTCT
GTCATCGAGA TGGCCGAAGC GGAATACATG ATTACCTCTT CGGGTTATCG TCAAACTATT
GAAGACTTTG CCGAAATTCC CTTAGGGATT TTATCTGCGG CAGGCACCCC TGTACTGATG
AAAGATGTGG CCCAGCTGCG CACAGGTCCA GCGGCAAGAC GCGGTATCGC AGAACTCGAT
GGTCAGGGCG AAGTGGTCGG CGGCATAGTG GTGATGCGCT ACGGCGGCAA TGCTTTAACC
ACAATAGACA ATGTAAAAGC CAAGCTTGCC CAAGTCGCAA ACGGCTTGCC TGAAGGCATA
GAGTTAGTGG TCACTTACGA TCGCTCCCAG CTCATCCTCA ACTCAGTGGA TAACCTTAAA
AATAAGGTGA TTGAAGAGAT GCTAGTGGTG GGCTTTGTCT GCCTTATCTT CTTACTTCAC
GCCCGCTCTA CCTTAGTGGC ATTTATCTCC TTGCCGTTAT CAATTTTAAT CAGCTTTATT
GGCATGAAGT TGATGGGGGT GAACGCCAAC ATTATGAGTC TTGGCGGCAT AGCCATCGCC
ATAGGTGCAG TAGTGGATGC GGCCATAGTC ATGGTGGAAA ATGCCCATAA GCACTTGGAA
CATTACCGCG AGCAACACGG CAAACCTCCC GAAGGTGAGG CCCACTGGGA GCTAATTAAA
GAGTCGGCAG TTGAAGTGGG GCCAGCACTC TTTTTCAGCT TACTTATCAT TACTTTAAGC
TTTATCCCTG TGTTTGCACT AGAAGCACAG GAAGGCCGCT TGTTCCACCC TTTAGCCTAT
GCAAAATCAT TTGCCATGGC GGCGTCGGCG CTCCTTGCCA TCACGCTTAT TCCTGTGCTA
ATGGGGTATT TCGTTCGCGG CAAGATCCCA GATGAACGTA AAAACCCCTT GAGTCGTATG
CTAATTGCCC TCTATCAACC TAGCCTCAAC TTAGTGCTGC GCTTCCCTAA GAGTACCTTA
GTGGCCGCCC TATTGGCGTT AGGCAGTGCG TATTTCCCCA TGAGTCAGCT AGGTTCTGAG
TTTATGCCAT CACTGGAGGA AGGTGACTTA CTCTATATGC CCACCACTCT GCCAAGCGTG
AGCCCGGGCA AGGCCGCCGA AATCTTGCAG CAAACTGACC GTTTGATAAA GACAGTCCCA
GAGGTGAAGC GAGTCTTTGG TAAGGTGGGC CGCGCGGTCA CAGCCACAGA TCCCGCACCG
CTAACCATGC TTGAGACCAC CATAATGCTG CACCCAAAGG AAGAGTGGCG TGACGGCATG
ACCCTAGAGG GCATCATCAA TGAGCTGCAG CAGACGGTTA AAATTCCAGG AATGACCAAT
GCCTGGGTGC AACCCATCAA GACGCGCATC GACATGTTAT CCACCGGGGT TCGTACTCCC
GTGGGCATTA AGATCTCCGG CGCTAATGTG GCCGAGCTTG AAGCCATAGG CACACAAATC
GAAGCCATAG TCAGCACACT ACCTGGAACC TTGTCGGCAT TTGCCCAGCG TACCAGTGGC
GGGCGTTATA TTGATATCAC GCCCGATCTC AAGATGGCAG CCCGTTACGG CATGACCTTG
GCCGATATCC AAGATGTCAT TCAGATTGCC ATTGGCGGCA TGAAGGTCGG TGAATCCATT
CAAGGGCAAG AACGCTACCC GATAAACATC CGCTACCCAA GAGAGCTTAG GGACAATATA
GAGAAGCTTA AAGACTTGCC GGTACTGACT AAAACTGGCA AGTACATACC TTTAAGTAAT
CTTGCCAGCC TTGTCATCAG CAATGGTCCA CCCATGCTTG CCAGTGAAAA TGGCCGCCTC
ATTTCTTGGG TATTCGTCGA TTTGAAAGAC ATTTCTGTCG GCGATTACAT CAAGCAGGCG
CGCAGCGCAC TGGATGCTCA AGTGAAGTTA CCGCCTCGTT ATAGCTACAG CTTTGCCGGT
CAATACGAGT ATATGCAGCG AGTAGAAGCT AAGATGCAGC TGGTGATCCC TGTGATGCTG
GCAGTGATCT TCATCTTGCT CATGCTCACC TTTAACTCCT TAGTGCAGGC GTCAGTCATC
ATGCTCAGCC TACCCTTTGC CTTAGTGGGC AGCGCCTGGT TATTGTTTAT GCTGGACTTT
AATCTTTCGG TCGCGGTTTC TGTGGGCATG ATAGCCCTAG CCGGGGTTGC CGCCGAGTTT
GGGGTGGTGA TGCAGGTCTA CTTAAACAAC AGCATCAAGG CCCATACGGA CAGGGGTGAG
ATGCGCAATC GAGAGGATTT ACGCCAAGCC TTAATGGAAG GTGCCGTGAT GCGCATTCGC
CCTAAAGCCA TGACGGTCGC CACCATCTTC TTTGGCTTAT TACCTATCAT GTGGGGCAGC
GGTACGGGCA ACGAGGTAAT GCAAAAAATC GCCGCCCCTA TGGTGGGCGG TATGGTCACA
GCGCCGTTAT TATCGTTATT TGTTATCCCC GCTATTTACC TGCTGATTTA TGGTAGAAAA
TTGCGGTAA
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| Protein sequence | MLAKIISAAI NQRAMVLLLT LVVALLGYQS MRTLPLDALP DLSDVQVIIK TSYPGQAPQL
VEDQITYPLS TAMLAVPGAK TVRGFSMFGD SFVYIIFEDG TDIYWARSRV LEYLSQTQGQ
LPPGVTPSLG PDASGVGWVF QYALVDRNGT HDLAQLRSLQ DWFLKLELQS VEGVSEVATI
GGMEQAYQVV VDPHKLALYQ IDLSTIQNAL RDSNSSVGGS VIEMAEAEYM ITSSGYRQTI
EDFAEIPLGI LSAAGTPVLM KDVAQLRTGP AARRGIAELD GQGEVVGGIV VMRYGGNALT
TIDNVKAKLA QVANGLPEGI ELVVTYDRSQ LILNSVDNLK NKVIEEMLVV GFVCLIFLLH
ARSTLVAFIS LPLSILISFI GMKLMGVNAN IMSLGGIAIA IGAVVDAAIV MVENAHKHLE
HYREQHGKPP EGEAHWELIK ESAVEVGPAL FFSLLIITLS FIPVFALEAQ EGRLFHPLAY
AKSFAMAASA LLAITLIPVL MGYFVRGKIP DERKNPLSRM LIALYQPSLN LVLRFPKSTL
VAALLALGSA YFPMSQLGSE FMPSLEEGDL LYMPTTLPSV SPGKAAEILQ QTDRLIKTVP
EVKRVFGKVG RAVTATDPAP LTMLETTIML HPKEEWRDGM TLEGIINELQ QTVKIPGMTN
AWVQPIKTRI DMLSTGVRTP VGIKISGANV AELEAIGTQI EAIVSTLPGT LSAFAQRTSG
GRYIDITPDL KMAARYGMTL ADIQDVIQIA IGGMKVGESI QGQERYPINI RYPRELRDNI
EKLKDLPVLT KTGKYIPLSN LASLVISNGP PMLASENGRL ISWVFVDLKD ISVGDYIKQA
RSALDAQVKL PPRYSYSFAG QYEYMQRVEA KMQLVIPVML AVIFILLMLT FNSLVQASVI
MLSLPFALVG SAWLLFMLDF NLSVAVSVGM IALAGVAAEF GVVMQVYLNN SIKAHTDRGE
MRNREDLRQA LMEGAVMRIR PKAMTVATIF FGLLPIMWGS GTGNEVMQKI AAPMVGGMVT
APLLSLFVIP AIYLLIYGRK LR
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