| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3430 |
|---|
| Symbol | |
|---|
| ID | 4019978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 4096254 |
|---|
| End bp | 4099367 |
|---|
| Gene Length | 3114 bp |
|---|
| Protein Length | 1037 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637957482 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_564428 |
|---|
| Protein GI | 91794777 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAA CCAAGATCAG CACAGAAAAT ATCGCTGGTA CCTTAGTCAC CCTGTTACTC
ATCTGTATTT TTGGTCTTAT GGCCATCGCT AGGCTACCTA TTCAGTTGTT ACCTGACATA
GAGCGGCCGC AGATATCTGT CTTCAACAAC TGGCGCAGCG CCGCGCCCCA GGAGATGGAA
TCTAACATCA TAGAGCCCCA AGAAAACGTG CTACGTCAAG TGCCAGGTGT GGTGGAGATG
ACCTCATATA TTTCTCAGGG TTTTGGTGCA ATTACTCTCA CTTTTGAGGT TGGTAACAAT
ATGCAGGAGG CGATGATCAA TGTGATCAAC GCTCTTAACC AGACGCCACC CCGACCGCTG
GACGCCGATG AGCCGTATAT TAATGCTGGT GGCAGTAGTG GGGGGACTAA CCTCGCCTCA
TTGCTTATTC GCATGGCACC TGAAAATCCA GATACAAATT TTGTCAAGTA TCAGAAACTT
ATTGATGATG TTGTCGAACC TAGGCTCAGG CAAATTACAG GTGTCGGCAG CGTAAATTTG
CAGAGTCGCC AGTCTAAAGA GCTTCATATT GAATTTGATC CCTACCGCGC TGCAGCCTTA
GGGATCACCT TAGAACAGCT GCGTAATACC CTTTCAAGGG CTGCTGATAT CTCTGGTGGC
ACAGCCAAGG TGGGCCGCCG TCAATATACT GTGCGCTTCA TTGGCCAATA CACCCCAGAA
AACTTAGGTA ATCTTATCGT TACCTATAAC GAAGGTCGCC CTGTGTATCT CAGTGAATTG
GCTGAAGTTA AAATAGGCAC CGCAGAGGTA ACTGGTTTCA CTAAGCGAAA TGGCTATTCT
GCCTACTATA TGACGCTTGA TGGCACTTTC GATGCCAATA CTGTCTCGGT ATTGGATGGT
GTGAATCTGG CTATCAGTGA GCTTAATGCC GGAGCCTTAA AAGAAGCAGG TCTTGTGATG
GATTTGTCTT TCGATGCCTC TGTGCACATC AAGCGAGCGA TTTTACTGGT CAAGGGGAAT
CTTGCTATTG GGGTTGTGCT CGCGCTCATA ATACTGTTTG CCTTCTTGCG GAATTTCAAG
GCGACCTTGA TGATCGCCTC CACAATTCCT GTGGCACTGC TCATCGCCTT CTTTTCGCTA
GAGGTTATGG GACGAACCTT AAATGTCATC TCACTGGCTG GCCTAGCATT TGCCGTAGGT
TTAGTGCTGG ATGCGGCCAT CATAGTGCAG GAGAATATCG TTCGTCTGCT GCAACAGGGG
AAGACTCTGC AGCACGCCGT CCTTGAGGGA ACGACCCAAG TGCGAGGTGC CTTGTTGGCC
TCGACCGCCA CAACGGTCGC CATCTTTCTG CCTATTCTCT TTATGCCCGG GGTCGAGGGC
CAGCTGTTCT CCGATTTGGC ACTGACCCTG TCGGTGGCTG TGGTGTCTTC TTTTGTCAGC
GCGATTATGC TGATCCCAGT ATTTAGCCTG TTGTGGCTGA GAATGCCACC CATGGATGGC
ACGACGATCG CAAGGGACGA GCTCTGGCAG AAGGTCACAC TCTTGGTCAA AAGGCTCACA
GGCACACGTA AACTGGCGAC GCTTTGGTGT TCGACGCTTA TCCTAGGTGC AGGGATTCTG
GCCTTTGCCA TCATGCCCAG ACCCGACTTC CTGCCACAGG CCAAATCGGA TGGTATTGTG
ACTTTCTTTT CCTTGCCGCC AGGTACAAAT ATCGAAAATG TAGAGACAGA GATAGGCGAC
ACCATTATTG CCCGTCTTAA ACCCTATTAT GATAAAGAAA AACAGCCCTT TATAAGTGGC
TATAATTTCT CCATATATTC TGCTTTTAAT GTGTTATTTA TTTATCCACA AGATCCCGAG
AAGTCAGACG ACATGATAGC CCTGTTGCAG GACGAAATAC TCATAGATCT GCCAGACACT
CAGACCTTCA GTAATCGCTC CTCTTTGTTA GAGTTTGGCT TCAATGGGGG ACGAACAATC
AACATAGATT TACAGGGGCC CGACATGGAA GCCCTGATGG AATCTGCGAG TAAAGGTATG
GGCATAATCA ATGAAGCCTT ACCTGGCGCG GTTGTCAGAC CCATCCCCGG CCTGTCCATG
GCTCAACCTG AATTGCAGTT AATTCCAGAT GAGCGTCGCA TAGCTCAAGC GGGTGTTGAT
AAAATTCAAA TCGCCAACGC AGTGCGTGCC TTTACATCGG GCTTGTTTGT TGGCGAATAC
TTCGATGGCA ATGAGCGCAT GGACATTTTG CTCAAAGGTC CCAAGTGGCA GGTGCCTGAG
CAGCTGGCTG CAACACCAGT GTTCACTCAG GGGGCGGGCA TTCAGACCCT AGGAGAGTTG
GCCCGCATCG AACGTACTGT GGGTCCGACC CAGCTGCAAC GGGTTAACGG TAAGCGTAGC
GTCAGCTTAT TAATTTTCCC GCCGGAGAAT ATGACCCTAG ATGAGGCGAT GGAGCTTATC
AATACCAAGG CGCTGGATGA GCTCAAGGCA GCATTGCCAG AAAACAGCTC AATAAAGTTC
AGGGGGGGTG CCGACAAATT GGATGAAACC ATTACCAAGA TGGGCAACAA CTTTTTGCTG
GCCGTGCTGA TCCTCTTCCT GCTGATGGCG GCCATGTTCA AGTCAGCCAA AGATAGCTTA
TTGGTATTAC TGTCCATGCC ACTAGCCTTG TGTGGCGGCG TGGTTAGCTT GAGCCTACTT
AATCTGTTCA GTTTCCAGAG TCTGGATTTG CTGACCATGA TAGGCTTCAT CATCTTACTG
GGTTTGGTGG TCAACAACGC CATACTCTTA GTGGATCAGA CGCGCCAGGG CAGCCGCGAT
GGCCTGACCT TAGATGATGC CATTTATCAG GCCGTGTATA CCCGTGCCCG TCCCGTCTAT
ATGAGTACCC TGACCAGTAT CTTCGGCATG TTGCCACTAA TGCTGGTGCC TGGGGTTGGC
AGTGAAATCT ATCGAGGTCT GGCGGCGGTG ATCGTCGGCG GCATGAGCTT CAGCGCCCTC
TTTACCCTGA TTTTGATGCC CAGCCTGCTC AGGCTCACCT CGTCCGCCAA CCTAACAAGC
GCTTCAGCCA ATGCGAACAC TATGGCGGCC AACGCGCCAG TCTCAAGGAG TTAA
|
|---|
| Protein sequence | MNLTKISTEN IAGTLVTLLL ICIFGLMAIA RLPIQLLPDI ERPQISVFNN WRSAAPQEME
SNIIEPQENV LRQVPGVVEM TSYISQGFGA ITLTFEVGNN MQEAMINVIN ALNQTPPRPL
DADEPYINAG GSSGGTNLAS LLIRMAPENP DTNFVKYQKL IDDVVEPRLR QITGVGSVNL
QSRQSKELHI EFDPYRAAAL GITLEQLRNT LSRAADISGG TAKVGRRQYT VRFIGQYTPE
NLGNLIVTYN EGRPVYLSEL AEVKIGTAEV TGFTKRNGYS AYYMTLDGTF DANTVSVLDG
VNLAISELNA GALKEAGLVM DLSFDASVHI KRAILLVKGN LAIGVVLALI ILFAFLRNFK
ATLMIASTIP VALLIAFFSL EVMGRTLNVI SLAGLAFAVG LVLDAAIIVQ ENIVRLLQQG
KTLQHAVLEG TTQVRGALLA STATTVAIFL PILFMPGVEG QLFSDLALTL SVAVVSSFVS
AIMLIPVFSL LWLRMPPMDG TTIARDELWQ KVTLLVKRLT GTRKLATLWC STLILGAGIL
AFAIMPRPDF LPQAKSDGIV TFFSLPPGTN IENVETEIGD TIIARLKPYY DKEKQPFISG
YNFSIYSAFN VLFIYPQDPE KSDDMIALLQ DEILIDLPDT QTFSNRSSLL EFGFNGGRTI
NIDLQGPDME ALMESASKGM GIINEALPGA VVRPIPGLSM AQPELQLIPD ERRIAQAGVD
KIQIANAVRA FTSGLFVGEY FDGNERMDIL LKGPKWQVPE QLAATPVFTQ GAGIQTLGEL
ARIERTVGPT QLQRVNGKRS VSLLIFPPEN MTLDEAMELI NTKALDELKA ALPENSSIKF
RGGADKLDET ITKMGNNFLL AVLILFLLMA AMFKSAKDSL LVLLSMPLAL CGGVVSLSLL
NLFSFQSLDL LTMIGFIILL GLVVNNAILL VDQTRQGSRD GLTLDDAIYQ AVYTRARPVY
MSTLTSIFGM LPLMLVPGVG SEIYRGLAAV IVGGMSFSAL FTLILMPSLL RLTSSANLTS
ASANANTMAA NAPVSRS
|
|---|
| |