Gene Sden_3412 details

Gene Information

• Locus tag: Sden_3412
• ID: 4019960
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 4070844
• End bp: 4072703
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637957464
• Product: dihydroxy-acid dehydratase
• Protein accession: YP_564410
• Protein GI: 91794759
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR00110] dihydroxy-acid dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAGT TACGCTCAGC AACCAGCACA GAAGGCCGCA ACATGGCAGG CGCTCGTGCC 
CTATGGCGAG CCACAGGCAT GAAAGATAAC GACTTTGGCA AGCCCATTAT CGCCATTGCC 
AATTCTTATA CTCAGTTTGT CCCAGGGCAT GTGCATTTAA AAGACATGGG CGACTTAGTG 
GCAAGCGCTA TCGCAGAAGC GGGCGGTATC TCTAAAGAGT TCAACACTAT AGCCGTCGAT 
GATGGCATCG CCATGGGCCA TGGCGGCATG CTTTATAGCT TGCCGTCACG TGAGTTAATA 
GCCGACAGCG TCGAGTACAT GGTCAATGCT CACTGCGCCG ATGCTTTAGT GTGTATCTCT 
AACTGCGACA AAATCACCCC TGGGATGTTA ATGGCCGCAT TAAGGCTAAA TATTCCTGTG 
GTGTTTGTCT CTGGCGGGCC GATGGAAGCG GGTAAAACTA AGCTTTCCGA TAAAATCATT 
AAGCTCGATT TAGTCGATGC CATGGTCGCC GCCGCCGATA GCAGCGTAAG TGAAGAAGAC 
AGCGCCAAGA TTGAGCGTAG CGCCTGCCCA ACTTGTGGTT CTTGCTCTGG CATGTTTACT 
GCTAACTCGA TGAACTGTCT AACCGAAGCG CTAGGGTTAT CTTTGCCCGG TAACGGCTCC 
ATGTTAGCTA CCCACAGCGA TCGCCGCGAA CTGTTTTTAG AGGCGGGTCG CAGGGTGATG 
GCGTTAACCA AACGTTATTA TCATGATGAC GATGAAACGG CACTGCCGCG CAATATCGCA 
AGCTTCAAGG CGTTCGAGAA TGCCACGGCG CTGGATATCG CCATGGGTGG CTCGTCCAAT 
ACCGTGTTGC ATTTATTGGC AGCCGCTCAA GAGGCTGAAG TGGATTTCAC CATGGCGGAC 
ATTGACAGAA TATCTCGCAA AGTGCCGCAT CTGTGTAAAG TCGCCCCTTC GACGCCTAAA 
TATCACATGG AAGATGTCCA CCGCGCTGGC GGGGTGATGA GCATTCTAGG GGAGTTAGAT 
AGAGCTGATC TGTTGCATAC AGATGTGCCC CATGTGGCAG CTGACAGTGG CGAGAATTTA 
TCCCATGTAT TGGCGCGTTA CGATCTAGTG CAAACCCAAG ATGAAAACGT GAGGCGTTTC 
TTTAGTGCAG GCCCTGCTGG TATTCCTACC ACCAAAGCCT TTAGTCAGAG CTGTCGCTGG 
CCGAGTGTCG ATGATGACAG GCAAAATGGT TGTATTCGCA GCCGTGAATT TGCCTTCAGT 
CAAGAGGGCG GCCTTGCTGT GCTATCGGGC AATATCGCCC CTAAGGGCTG TATCGTCAAA 
ACCGCTGGCG TGGATGAAGA TAATCTCACT TTTGTGGGCC GCGCCCGCGT TTATGAGAGC 
CAAGATGATG CGGTGGCAGG GATTTTAGGC GGTGAAGTGG TGGCTGGGGA TGTGGTGGTT 
ATTCGCTATG AAGGCCCTAA AGGTGGCCCC GGCATGCAAG AGATGCTCTA TCCCACCTCT 
TATTTAAAGT CTCGCGGCCT TGGCGCTCAA TGTGCCTTGA TCACAGATGG GCGTTTTTCG 
GGGGGCACCT CGGGCTTATC TATTGGCCAC GTGTCACCAG AAGCCGCGTC GGGGGGCGCT 
ATCGCGCTTA TCGAACAAGG CGATGAAATC GTCATTGATA TCCCAGCGCG CACCATAGTG 
CTGAATGTCA GTGATAGTGA ACTTGAAGCG CGCCGCCAAG CCATGGACGC CAAAGGCGTA 
CTCGGGTGGA AGCCGCTTAA TCGCCAGCGT TATGTGTCGT TAGCCTTGAA AGCTTACGCC 
CTATTGGCAA CCAGCGCCGA CATGGGTGCA GTGCGAGACC GCACTCTGTT GGAGGGTTAG 

 

Protein sequence

MPKLRSATST EGRNMAGARA LWRATGMKDN DFGKPIIAIA NSYTQFVPGH VHLKDMGDLV 
ASAIAEAGGI SKEFNTIAVD DGIAMGHGGM LYSLPSRELI ADSVEYMVNA HCADALVCIS 
NCDKITPGML MAALRLNIPV VFVSGGPMEA GKTKLSDKII KLDLVDAMVA AADSSVSEED 
SAKIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS MLATHSDRRE LFLEAGRRVM 
ALTKRYYHDD DETALPRNIA SFKAFENATA LDIAMGGSSN TVLHLLAAAQ EAEVDFTMAD 
IDRISRKVPH LCKVAPSTPK YHMEDVHRAG GVMSILGELD RADLLHTDVP HVAADSGENL 
SHVLARYDLV QTQDENVRRF FSAGPAGIPT TKAFSQSCRW PSVDDDRQNG CIRSREFAFS 
QEGGLAVLSG NIAPKGCIVK TAGVDEDNLT FVGRARVYES QDDAVAGILG GEVVAGDVVV 
IRYEGPKGGP GMQEMLYPTS YLKSRGLGAQ CALITDGRFS GGTSGLSIGH VSPEAASGGA 
IALIEQGDEI VIDIPARTIV LNVSDSELEA RRQAMDAKGV LGWKPLNRQR YVSLALKAYA 
LLATSADMGA VRDRTLLEG