| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3396 |
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| Symbol | |
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| ID | 4019944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4050197 |
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| End bp | 4052584 |
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| Gene Length | 2388 bp |
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| Protein Length | 795 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637957449 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_564395 |
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| Protein GI | 91794744 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAATGG ATCTAGCCCA GACTCCCCAA TACAAACCCC ACCAAAGTTT AGGCCGCTGG
ATGCTTGTCG GTATGTCGGC ACTCTTGCTA ACCACTGGTG CCTGCTTTCT ATTTTTTGCC
CACCAATTGA TGGAGGCTCG CTTCGATAGT TTCGATGCTA AGCACTATGA GCAAGAGCTC
ATGCGAGTGA ATGGGGTCTT TAAACAAAGC CGTCAATCTT TTGAACTGCT CCTCACCGAT
TATGCCCATT GGGATGATAC CGAGCAATTC ACCTTAGGCA CCAACCCCGA ATTTATCCAA
GAAAACTTGG TTCCAGAATC ACTGATAAAC ATTCAAGTTA ATGGTTTTAT CATTACTCAC
CTCGATGGCA GTTTAGTCAC TGCGCCGCAT CTGGTGATGG ACAACGAGTT AGTGCCTATG
CCTGAGTCCA TCTGGCAAAC ATTTTCAGCA TTACTCCCAA GCTTGATGAC GCCTGATAAG
CTCAGTGCCA ATACGGCACT AGCATGGGTG GGCACTGACG CCATAATGAT CACTGGCTCC
ACCATCACAG ACACAATCAA AAGCCATGAC CCTAGTGGCT ATTTATTTTT TATCCGCAAG
CTCGATAGCA AGATTATGCA AGGTTTCAAA AACATGACTC TAGTCGATTT TGAGTTATTA
CCTGCGCCTA TTAGCCAAAA TGCGCAAGTG GAAATCCATA CCCTACTAGT GAATGATGAG
CCCCATTGGA TAGTGGATAA AAACCTTGCT GGGCTACCCG CCAAGATAAA AGTACAAGGA
GGCACCTTCC TTGAAGAAGA GCGTAGCTTA ACCTTGTTAT TATTGGCCTT AAGTGTGGCC
GGCCTTAGTC TCATTTCCCT TTTGGGAGTC TTTTGGATAA TGAACTTTAA AGTATTGAAA
AGAATACGCT TATTCTCAGC GCTTGCGGAT CAACACAGAC AAGCGCCTGA GCAAAGCATT
CATTGGCCAA TAGTGGGCAA GGATGAGCTA GATAATTTAG CCATATCCCT AAATGAGTTT
ATTAGTGAAG TGGGCAAACG TCATGATGAT TTAAGTTATT TGGCTGAGCA TGATGCCTTA
ACGGGCTTAG GCAACCGCCG CTTACTCATG TCCCGTTTAG ATGCCAATAT GAATCACCAC
CAAAGAAACC CAAAATTCAT CAGTACCTTG CTGCTATTAG ATCTCGATAG TTTCAAATTA
TTAAACGATG GTTTAGGCCA CAGTGCTGGA GATGACATAC TCAGACTCGT TGCCAAACGC
ATGCTGGCCA TGGTTCGAAA CTACGATACT GTGGTACGCC TAGGGGGAGA TGAATTTGCC
ATTTTATTAG AAAATGTCGA ACCTGAAATG GTGCTGCCCT TTGCCGAGCG TTTACATCAA
CAAATTTATG AATCATTTGA ATACAATGGC CATAAACTTA AGTTAAAAGC CTCGATTGGT
TTAGCGGCAG TAAAATCCGC TTTATCTAAA GAAGATGTGA TCCGCAATGC CGATCTTGCC
ATGTACGAAG CCAAGCGTAA GGGCAGAAAT CAAACCGTCG TATTTAGAGT GGATTTACTG
GATGCCGTCT CACGTCGATT GCAATTAGAG CAAGCGTTAC AAGAAGCCCT TAACCACCAA
GAATTGGAAG TCTGGTTTCA ACCTATTGTC GATGCTCGCA ATGGAAAGGT TGTCGCCATG
GAAGCCTTAT CCCGCTGGTT TTTAGATGGA ATTTTCGTTC CTCCCGATGA GTTTATCAAA
ATTGCCGAAG CCTCGGGCAT GATCACTAAA TTGGGTAAGC AAGTGTTCGA TAATGTCGGC
GCTTCACTGG CGGACCTTAG GCTTAACTAC CCCGACCTTA TCTGTAATAT TAATTTATCC
GTGCGCCAAT TTCGTGACTC TAATTTGGAG GAAGATATAG TCGACTGCGC CACTAAATAT
CAGTTACCCA GCTCAGCGAT ACATTTAGAG CTAACCGAAA GCATGATCGC CACATCAGAA
ACAGAAATTC TACCCACCAT GTGCGCTTTA GTGGACAAAG GCTATAAATT CCACCTCGAT
GACTTCGGCA CGGGCTACTC CTCCCTTGAG CGCCTACGTA ATTTACCCTT CGACACCTTA
AAAGTGGACC GTAGCTTTAT CACCCCACTG GGAAAGGGGG ATGATGTGAT GGTGAGAAAT
ATTATTAATA TCGGCAATGA GTTAGGCATG AGCTTGATTG CCGAAGGGGT CGAAACAGAA
ACAGAAGTGC ATAAGCTATT ACAGCTAGGT TGCTGGGATA TTCAAGGTTA CTATTTTGCC
CGCCCCATGC CACTGGCCAA ATTGAAACTG TGGCTTGCGG AAAACCAAAC CCAAATAGCT
CAGCAAACCT TTACCCAACA AAAGCACACT CAAGGCTATA TCATTTAG
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| Protein sequence | MLMDLAQTPQ YKPHQSLGRW MLVGMSALLL TTGACFLFFA HQLMEARFDS FDAKHYEQEL
MRVNGVFKQS RQSFELLLTD YAHWDDTEQF TLGTNPEFIQ ENLVPESLIN IQVNGFIITH
LDGSLVTAPH LVMDNELVPM PESIWQTFSA LLPSLMTPDK LSANTALAWV GTDAIMITGS
TITDTIKSHD PSGYLFFIRK LDSKIMQGFK NMTLVDFELL PAPISQNAQV EIHTLLVNDE
PHWIVDKNLA GLPAKIKVQG GTFLEEERSL TLLLLALSVA GLSLISLLGV FWIMNFKVLK
RIRLFSALAD QHRQAPEQSI HWPIVGKDEL DNLAISLNEF ISEVGKRHDD LSYLAEHDAL
TGLGNRRLLM SRLDANMNHH QRNPKFISTL LLLDLDSFKL LNDGLGHSAG DDILRLVAKR
MLAMVRNYDT VVRLGGDEFA ILLENVEPEM VLPFAERLHQ QIYESFEYNG HKLKLKASIG
LAAVKSALSK EDVIRNADLA MYEAKRKGRN QTVVFRVDLL DAVSRRLQLE QALQEALNHQ
ELEVWFQPIV DARNGKVVAM EALSRWFLDG IFVPPDEFIK IAEASGMITK LGKQVFDNVG
ASLADLRLNY PDLICNINLS VRQFRDSNLE EDIVDCATKY QLPSSAIHLE LTESMIATSE
TEILPTMCAL VDKGYKFHLD DFGTGYSSLE RLRNLPFDTL KVDRSFITPL GKGDDVMVRN
IINIGNELGM SLIAEGVETE TEVHKLLQLG CWDIQGYYFA RPMPLAKLKL WLAENQTQIA
QQTFTQQKHT QGYII
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