| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3347 |
|---|
| Symbol | |
|---|
| ID | 4019895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3989317 |
|---|
| End bp | 3990966 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637957400 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_564346 |
|---|
| Protein GI | 91794695 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.292077 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAA TTCGCTACTT AACTCCGCTG CTATCCCTGT GCTTACTGGC TTGCCAAACC
ACAGATAGAC CCGATCCTAA AGCCAGCAAG GCCTCACTCA ATGAGTCATT GCAAACCAGT
GCTAAGGTTA CCCCTCCCCC TGCGGCTATG CCTGGTAATG TGCAAAACGA GTTCAGCGGC
GCCGGCATTT TACCGCCGGC ATTATTACCC CAAGAAAAAC GCTTCGATGT GGCAGCAAAT
AACGTCGATG CGAAAGTCTT TTTCCCAAGC TTAGTGACGG GCACGCCTTT TAGTGTGGCC
GTTCACCCTG AGGTGCAAGG CAGTTTATCT TTGTCCCTTA AAGGCGTGAC GCTTTCAGAA
GTGATTGCGG TTGTTGAAGA CCTTTATGGC TATGAAGTCA GCCGTGAAGG GCGAATTTTG
CGTATTTTCC CTGCGGGCAT GCGCACCGAG ACCTTCCCAT TAAATTACTT ATATATGGAG
CGAGAAGGCC TATCTTTGAC TTCTGTAAGC TCTGGCCGAG TTTCAGATGG CAACAATAAT
TCCAACTCAA ACTCCAATTC AAGTTCTGGT TCTGGCTCCA GTAACAGTGG CAGTGGCGGC
TCAAGCAGCA GCGGCTCTGA GCAGTCTAAT GGCACCTTTA TTCGCTCTGT GACTAAATCT
GATTTTTGGG GCGAATTGCA ACAAACCTTA GTCTCCATTG TGGGCAGTAC CAATGGCGGC
AGGCAAGTGG TGGTCACGCC TCAGGCGGGG TTAGTGACAG TCAGAGCCTA CCCCAATGAA
ATTAGGCAAG TGCGCACTTT CTTAGAAACA GCAGAGACTC ATCTACAAAG ACAAGTCATT
TTAGAGGCTA AAATTGTCGA AGTGACCTTG TCAGATGGCT ATCAGCAAGG CATTCAATGG
GACAATGTCT TAGGTCATAT CGATAGCACA AATATCGAAT TTGGCACAGC CAAGGGCCCT
AATCTTTCAA ACAGTATTAC CAGTGTCCTC GGTGGAGTCA CTTCGCTGAG TGTCAAGAAT
ACCGATTTTA GTACCATGAT AAGCTTACTG GATACCCAAG GGGACGTAGA CGTACTCTCA
AGCCCCAGAG TCACGGCCTC CAATAATCAA AAAGCGGTGA TCAAGGTGGG CAATGATGAG
TACTTTGTCA CTAAGGTGTC TTCAACCACA GTGACGGGCA CCAACCCCAT TACGACTCCT
GAAGTGGAAT TGACTCCCTT CTTCTCAGGC ATAGCCTTAG ATGTGACCCC ACAAATCGAT
AGTGAGGGTA ATGTGTTGCT GCATGTTCAT CCTTCGGTGA TTAAGGTCAC TGAACAGATA
AAAGACATTC AAATTAATGG CTCATCGTCA GAGTTACCCT TAGCGCAAAG TGAAATCCGA
GAATCTGATA CTGTTATTCG CGCCGCCTCG GGTGATGTGG TGATTATCGG TGGTCTGATG
AAGAGTGATA ATGTGGAAAT GGTCTCAAAA GTGCCCTTGT TGGGGGATAT CCCTCTGTTA
GGTGAAATCT TTACTAACCG TTCGAAACAA ATGAAAAAGA CTGAGCTTAT CATAATGTTA
AAGCCCACTG TGGTAGGCGT TGATACCTGG AGAGAAGAGC TTAAGCGTTC TAAAGATTTG
CTGGATCTTT GGTATCCCAA AAGCGAGTAG
|
|---|
| Protein sequence | MTAIRYLTPL LSLCLLACQT TDRPDPKASK ASLNESLQTS AKVTPPPAAM PGNVQNEFSG
AGILPPALLP QEKRFDVAAN NVDAKVFFPS LVTGTPFSVA VHPEVQGSLS LSLKGVTLSE
VIAVVEDLYG YEVSREGRIL RIFPAGMRTE TFPLNYLYME REGLSLTSVS SGRVSDGNNN
SNSNSNSSSG SGSSNSGSGG SSSSGSEQSN GTFIRSVTKS DFWGELQQTL VSIVGSTNGG
RQVVVTPQAG LVTVRAYPNE IRQVRTFLET AETHLQRQVI LEAKIVEVTL SDGYQQGIQW
DNVLGHIDST NIEFGTAKGP NLSNSITSVL GGVTSLSVKN TDFSTMISLL DTQGDVDVLS
SPRVTASNNQ KAVIKVGNDE YFVTKVSSTT VTGTNPITTP EVELTPFFSG IALDVTPQID
SEGNVLLHVH PSVIKVTEQI KDIQINGSSS ELPLAQSEIR ESDTVIRAAS GDVVIIGGLM
KSDNVEMVSK VPLLGDIPLL GEIFTNRSKQ MKKTELIIML KPTVVGVDTW REELKRSKDL
LDLWYPKSE
|
|---|
| |