| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3343 |
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| Symbol | |
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| ID | 4019891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3984158 |
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| End bp | 3985375 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637957396 |
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| Product | type II secretion system protein |
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| Protein accession | YP_564342 |
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| Protein GI | 91794691 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00000142203 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCATCT ATCAATATCG AGGTCGCAAT GCCCAGGGGC AAGCTGTCAG CGCCGAGCTT
GAATCGACTA GCGAAAGTAG CGCCGCCGAT ACCTTGATGT CTCGGGGGAT CATTCCCCTT
GAACTAAAAG AAGTGAAGCA GCGGCACTCC TTTAGCCTTG GGGGCTTATT TACTCCAGGG
GTGTCTTTAG ATGAGCTGCA AATTTTTACA AGGCAAATGT ATTCACTGAC CCGCTCTGGC
ATTCCTATTC TGCGTGCTAT TGCTGGTCTG TCTGAGTCGA CTCACTCTAA GGTGATGAAA
GAGGCCTTGG AAGATATATT AGAACAATTA ACGGCAGGTC GGCCCTTATC TTCGGCGATG
AATCAATATC CTAAGGTGTT CGATGCCCTC TTTGTGTCCA TGATCCATGT GGGAGAAAAC
ACAGGTAAGC TTGAAGATGT GTTTATTCAG CTATCAAGTT ATATCGAGCG CGAGCAGGAG
ACCCGCAGGC GAATAAAATC GGCGATGCGC TACCCCATGT TTGTATTGGG GGCGATAGTT
ATTGCCATGG TTATTCTTAA TATCATGGTT ATTCCTAAAT TTGCCGATAT GTTTTCTCGC
TTTGGCGCCG AACTCCCTTG GGCCACTAAG CTGCTCATAG GTACCTCCAG CGCCTTCGTC
AATTATTGGC CTGCCATGCT GCTTGGCACT TTTGGGGTAT TCTTCGGCAT TCGTTATTGG
CACAGCACGG CGGAAGGTGA GAAAAAGTGG GATAGATGGA AGTTGAGCAT TCCCGCTGTC
GGTTCGATTA TTGAACGTTC TACCTTAGCG CGCTATTGCC GCAGTTTTTC TATGATGCTC
AGCGCCGGCG TTCCCATGAC TCAGGCCTTG AGTCTGGTGG CCGATGCGGT AGATAACGCC
TATATGCATG ATGCCATCGT CGGCATGCGG CGCGGCATAG AGTCCGGTGA GTCTATGTTA
AGGGTGTCAA ATCAGAGTCA ACTGTTTACC CCCTTAGTGC TGCAAATGGT GGCCGTGGGG
GAAGAGACGG GACAAATCGA TCAGTTATTA AATGATGCTG CCGACTTTTA TGAAGGTGAA
GTGGATTACG ATCTGAAAAA TTTGACCGCC AAACTCGAGC CCATATTGAT AGGCTTTGTT
GCTTGTATTG TGTTAATTCT GGCCTTGGGG ATTTATTTGC CCATGTGGGA CATGCTCAAT
GCCGCTAAAG GGGGCTAG
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| Protein sequence | MPIYQYRGRN AQGQAVSAEL ESTSESSAAD TLMSRGIIPL ELKEVKQRHS FSLGGLFTPG
VSLDELQIFT RQMYSLTRSG IPILRAIAGL SESTHSKVMK EALEDILEQL TAGRPLSSAM
NQYPKVFDAL FVSMIHVGEN TGKLEDVFIQ LSSYIEREQE TRRRIKSAMR YPMFVLGAIV
IAMVILNIMV IPKFADMFSR FGAELPWATK LLIGTSSAFV NYWPAMLLGT FGVFFGIRYW
HSTAEGEKKW DRWKLSIPAV GSIIERSTLA RYCRSFSMML SAGVPMTQAL SLVADAVDNA
YMHDAIVGMR RGIESGESML RVSNQSQLFT PLVLQMVAVG EETGQIDQLL NDAADFYEGE
VDYDLKNLTA KLEPILIGFV ACIVLILALG IYLPMWDMLN AAKGG
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