Gene Sden_3180 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3180 
Symbol 
ID4019706 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp3812624 
End bp3813031 
Gene Length408 bp 
Protein Length135 aa 
Translation table11 
GC content42% 
IMG OID637957230 
Producthistidine triad (HIT) protein 
Protein accessionYP_564179 
Protein GI91794528 
COG category[F] Nucleotide transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only 
COG ID[COG0537] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGTTG TAGAGCAAAT TGTTAGACGA GAAGTTGATG CCGTAATTCT TTACGAAACG 
GATAATGTCA TCGCATTTTT AGATCATGAC CCTATCAACC TAGGTCATGC ATTAATTTGC 
CCTAAGAAAC CCTATCACGA TTTTATTGAT GTCCCAGAGG ATGTCATGGC GGAGATATTG 
CTGGTAGCAA GAGCCATTTA TCGAAAAATA GTGAAGAAAT ATTCATCCGA AGGAGTTAGT 
TTACTTCAGA ATAATGGCAG CTTTAATGAG CTAAAACACT TTCACCTGCA TATCTTTCCA 
AGATTCAACA ATGACGGCTT TAGGTGGGTG AGTGCCGAAA TGGGTCTGCA AAGTATGGTA 
AAACTGCAGG CAGAAGCCAT AGGCCTAGGC GACGACGGTT TCGTCTAG
 
Protein sequence
MTVVEQIVRR EVDAVILYET DNVIAFLDHD PINLGHALIC PKKPYHDFID VPEDVMAEIL 
LVARAIYRKI VKKYSSEGVS LLQNNGSFNE LKHFHLHIFP RFNNDGFRWV SAEMGLQSMV 
KLQAEAIGLG DDGFV