Gene Sden_3167 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3167 
Symbol 
ID4019693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp3800702 
End bp3801340 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content46% 
IMG OID637957217 
Product2',5' RNA ligase 
Protein accessionYP_564166 
Protein GI91794515 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.592975 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCCAG AAAAACAGAG TCCAAATAAT CAAAATTCTA TTGAATTTAA ACGATTATTT 
CTGGGTTTTT CAATTCCAGC CAACCAGACT GAACTCTTGA CTGCACTGCA GCAACAGCTT 
ACGCCTCACT TAAACTCTGA CGCCAAGGCT ATTGCTGCAG AAAACTTTCA CCTAACCTTG 
TTATTTTTAG GTGGATTCCC CACCGCTCAG TTACCGCAAC TGCTAACGAC AATTGACACG 
CTCAGGCTCG CTTTATTTAA TCAAACCTTG ACCAAGTTAT GCTTTTGGCC TGGGCCCAAA 
ATCCTCTGCC TTAAGGGAGA AGCCTGCCCG AACCTCGCCG ATTTAGCCGA ACAGGTAAGC 
ACGCAGTTAG CCCCCTTGAT ACATAACCAG GCGCACAACC CCTTAATAAA AGAGCACTGC 
TACACGCCGC ACATCAGCCT GTTTCGCAAA GTAACACGCT TTAATCAGCA CCAAGCTGAG 
CCCTGTCTTC CTGAACGACA AATTAACTTA GCTCCACGGG AGTTACATTT ATATGAATCC 
CGCTCGGTGA ACACAGAGCA AAACGGCAAA GCTCAAAGTT CAGTGCGGTA TCAAATTCTT 
CATAGTTGGC CACTTATGCC AATGAAGAGT GAAGCGTAA
 
Protein sequence
MNPEKQSPNN QNSIEFKRLF LGFSIPANQT ELLTALQQQL TPHLNSDAKA IAAENFHLTL 
LFLGGFPTAQ LPQLLTTIDT LRLALFNQTL TKLCFWPGPK ILCLKGEACP NLADLAEQVS 
TQLAPLIHNQ AHNPLIKEHC YTPHISLFRK VTRFNQHQAE PCLPERQINL APRELHLYES 
RSVNTEQNGK AQSSVRYQIL HSWPLMPMKS EA