| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3102 |
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| Symbol | |
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| ID | 4019628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3729915 |
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| End bp | 3731657 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637957153 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_564102 |
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| Protein GI | 91794451 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTATGC TTGGTTTTGT TCGATTTATT TTCATCTTGC TGAGTGTTAC TGGAATGGCT
TTTTCTGCTG TGGCCGAAAG CCTTCCACGG GTTTTGCTGT TGAATTCTTA CCATCCTCAA
TATCAATGGA CCAAAGAATT AACTCGGGGG GTTCAGGAAA CTCTGGCGAG CAGTATTCCC
ATGGAGAATC TTCATATCGA GTTTATGGAT GAGCGCAGGT TTGCCGATGA TGCAGTTTAC
AAAACTAAGC TTGTGAGTCT GTTTAAGCAC AAGTATCAGC AATACTCGCC GGATCTTATT
ATTACTAGTG ACGACTATGC CTATGATTTT ATGATTGAAT ATGGTGATTT GCTGTTTCCT
GGCAAGCCCA TGGTATTTAG TGGCGTCAAT GTCTTCAAGC CTGAAACGCT ACAAGGTCGA
AGCCAGATCA CCGGGATCTT GGAAGGCATG GAGATTATCG GCAACTTGGA ATTGATAAAG
ACAATACAGC CAGATGTAAA ACGCATTGTT TTACTGGGGG ATACCACAGG GTTTGGCCGA
GGCATGACAG ATCTTGCCCG TGAGGTAAAG GCAAGCTGGC AGGCAGATCC TAGCTTGGCA
GCAGGGGTGA GCTTAGATAT TTGGGATAAG TTTACCTTAG TTGAGCTACA CCAGAGGGTG
GCTGAGTTAC CTACTGGCAG CGCAATTTTA GTGTTAGCGA TTCATAAAGA CAGCCAAGGG
CAATACTTTT CCTACGAGGA GCAGCTCCCT ATCCTGAGTC AAATCAGCAA AGTTCCCATT
TATGGCATGT GGGGCGCCTT GATGATAGGA AAAGGTGCCA TGGGAGGGCT GATGAATGAC
CCATTTGAGC ATGGCGCTAG CGCGGCTAAG ATGGCGCTGG CCATACTCGA TGGCATCCCT
ATCGCCCAAT TACCCATAAA GGAAAAGGCG GCCTTTACCC CAAGCTTCGA TTTCGCTCTA
TTAAATCGCT TCGCTATCGA TAGGGCGCTT TTACCCCAAG GCAGCAAGCT TGTCGGTGAG
CCTAAGTCTC TCTATCAAGA ATATGGCGGC CTGATAAATA GCGTCTTGTT GTTATTAACC
TTTTTGATGC TTGTCATTTC CGTGTTATTG ACCAATATTC GCAAGAGAAT AGCCGTTCAA
ATCCAATTAG ATAAACTCAA TCGAGAGCTT GAGTTTCAAG TGCAAGAGCG AACCCAAGAT
CTTAACTTGC GTAACAGCCA GTTGCATGAT GCCACGATAA ATATGCGTCA ATTAGCATTT
ACAGACCCTT TAACCGGGCT ATCCAATCGA AGGGCTGGCA CGGTTGAAAC TGGGGCTTAT
TTGTCACGCT TTAAACAAGA TAACCTCGCG TTATCAGTGG CGATATTGGA CATAGACTTT
TTCAAACGTG TTAATGATAC CTATGGTCAC AGTCGCGGTG ATGAAGTTTT GATTAGTTTT
GCTCGTTTGC TTAAGGCAAC AGTCAGGCCT AGCGATCGCT TGTATCGCTG GGGAGGGGAA
GAGTTTCTGG TTTTATTTCC TGGGGCGGAT ATTGCCGCTG CGACCCAAGT TTGTGAGCGT
TTATGTCACA CCATAGCGAG CAAACACTTC GAGGGCGTTG GCCGCATAAC AAGCAGCCTT
GGGGTGACTG AAGCTAGCCT AGATGATAGC TTAGATTCCT TAGTATCCCG TGCGGATGTC
GCCTTGTATC AAGCCAAACA GCAAGGGCGA AACCGAGTTT GTATTGGTGA ACGAGCCCCA
TAA
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| Protein sequence | MSMLGFVRFI FILLSVTGMA FSAVAESLPR VLLLNSYHPQ YQWTKELTRG VQETLASSIP
MENLHIEFMD ERRFADDAVY KTKLVSLFKH KYQQYSPDLI ITSDDYAYDF MIEYGDLLFP
GKPMVFSGVN VFKPETLQGR SQITGILEGM EIIGNLELIK TIQPDVKRIV LLGDTTGFGR
GMTDLAREVK ASWQADPSLA AGVSLDIWDK FTLVELHQRV AELPTGSAIL VLAIHKDSQG
QYFSYEEQLP ILSQISKVPI YGMWGALMIG KGAMGGLMND PFEHGASAAK MALAILDGIP
IAQLPIKEKA AFTPSFDFAL LNRFAIDRAL LPQGSKLVGE PKSLYQEYGG LINSVLLLLT
FLMLVISVLL TNIRKRIAVQ IQLDKLNREL EFQVQERTQD LNLRNSQLHD ATINMRQLAF
TDPLTGLSNR RAGTVETGAY LSRFKQDNLA LSVAILDIDF FKRVNDTYGH SRGDEVLISF
ARLLKATVRP SDRLYRWGGE EFLVLFPGAD IAAATQVCER LCHTIASKHF EGVGRITSSL
GVTEASLDDS LDSLVSRADV ALYQAKQQGR NRVCIGERAP
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