| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3003 |
|---|
| Symbol | |
|---|
| ID | 4019528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3606445 |
|---|
| End bp | 3608241 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637957054 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_564004 |
|---|
| Protein GI | 91794353 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3500] Phage protein D |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTATGG CGGCATCCCC ATTAGCCAAT AGCGATGGTG TAGTAAATTA CAGTATTAGC
GCCGATGGTA GTGCGCTGAA GGAGAGCATT AATGTGCTCT TGATTGAAGT GAACACTGGG
GTAAACCAAG TCCCCATGGC GCGGTTTGTG GTCAGTGACG GTGACATGCC AGATAAAGAT
TTTCCTGTCA GCACTGAGGC CTGCTTTAAG CCCGGTACTA AGATAGTCAT CAAGGCAGGT
TATGCCAGTG AAGCCAAGGT GATTTTTAGT GGCATCATCA TAGGCCTTGG CATTTCAATT
GGACGCAATA ATGACTCCAA TTTAATTGTC GAATGTAAAG ATCAATGCGT GGCCATGACT
ATAGCTCGCA AGAGTGCCAA TTATGTAAAG CAAAAAGACA GCCAGATAAT CGAAACCATC
ATAGGGCAAT ACGGGAGTCT CAGTAGCCAA GTGACGGCGA CAGAGTCCCA ATACAGTGAG
TTGGTGCAAT TTAACTGCAC AGATTGGGAT TTTATCTTGG CTCGCGCCGA AGTGAATGCG
TATCTCGTGT GTGTCGATGC TGCCAAGGTG ACAGTGGCGC CGCCCAATGT CAGTGACGCC
AGCGTCTTAA CTGTGACCTA TGGCGAAGAC CTCATCGACT TTCAAGCGGA TATCGATGCT
AGGTATCAGC TGTCATCGGT AAAGAGTGTC TGCTGGGATC CAAGCGAGCA GACCAGCCAA
GAGCAAGAGG TGGCATCCCA AAGCTTGAAT CAACAAGGGG ATTTATCGGC AAAAGATCTG
GCCAGCACCT TGTCAGTGGA TGACTTTAGA TTGCAAAGCG GCAATAACAT GGACACGGCG
TCACTCAAGG CGTGGGCCAA AGGCCAGCAG GTGAAGTCTG GGCTTGCGCG AATTCGCGGC
AAAATGACGT TTCAAGGCAA TGCTGCCGCC AAAATTAACA CCCAAATTGA CGTGCAAGGG
GTTGGCAGTC GTTTCAATGG CGCGGTATTT GTCAGCCGAG TGCGCCACGA AATAGTCGAT
GGCCAATGGT TAACCGACAT AGAGTTTGGC ATGTCGCCGG CCTGGTCGAG TGAGTATCGG
GATATTACAG CACCGCCTGC CAGCGGGGTG TTACCCGCGG TGGAGGGCTT GCAAATAGGC
ATAGTGATGC AGCTCGATGG CGACCCCATA GGCCAGAATC GCATTCAAGT TAACGTGCCT
GTGATGCAAG CCAAGACCCC TGGTGTCTGG GCGCGTTTGG CAAGTTTCTA TGCCTCCAAA
GAGATTGGTA GCTTCTTTCT GCCTGAGGTG GGTGATGAGG TGGTACTGGG ATATTTTAAT
AATAACCCCA GTGAGCCGGT GATTTTAGGC AGTCTTTACA GCAGTAAGAA TCCGCCTCCT
TACGAAATCG CGGCGGACAA TGACACTAAG GCTATTGTGA CTCGCAGCAA GCTTAAGCTT
GAATTTAATG AGAAAGACAA GGTGATCACC ATCATTACTC CGGGAAATAA CCAGATAGTT
TTCAGCGATA AAGATAAGTC CATCCTGCTG CAAGATCAAA ATAACAATAA AGTGGAGCTG
AACAGCAGTG GCATCAGCCT AGACAGCCCC AAAGACATCA AGCTCAGCGC CAAAGGCAGC
ATGACCTTAG ATGCCGTCGG CGCCATGACC ATAAGCTCAA AAGCCGATGT CAAAATTAAC
GGCATGAACA TACAGCAAAC GGCGCAGATA GGCTTTACCG CTAAGGGCAG TGCCAGTGCA
GAGCTCTCAG CATCTGGGCA GACGACGGTC AAAGGCGCCA TGGTGATGAT AAATTGA
|
|---|
| Protein sequence | MTMAASPLAN SDGVVNYSIS ADGSALKESI NVLLIEVNTG VNQVPMARFV VSDGDMPDKD
FPVSTEACFK PGTKIVIKAG YASEAKVIFS GIIIGLGISI GRNNDSNLIV ECKDQCVAMT
IARKSANYVK QKDSQIIETI IGQYGSLSSQ VTATESQYSE LVQFNCTDWD FILARAEVNA
YLVCVDAAKV TVAPPNVSDA SVLTVTYGED LIDFQADIDA RYQLSSVKSV CWDPSEQTSQ
EQEVASQSLN QQGDLSAKDL ASTLSVDDFR LQSGNNMDTA SLKAWAKGQQ VKSGLARIRG
KMTFQGNAAA KINTQIDVQG VGSRFNGAVF VSRVRHEIVD GQWLTDIEFG MSPAWSSEYR
DITAPPASGV LPAVEGLQIG IVMQLDGDPI GQNRIQVNVP VMQAKTPGVW ARLASFYASK
EIGSFFLPEV GDEVVLGYFN NNPSEPVILG SLYSSKNPPP YEIAADNDTK AIVTRSKLKL
EFNEKDKVIT IITPGNNQIV FSDKDKSILL QDQNNNKVEL NSSGISLDSP KDIKLSAKGS
MTLDAVGAMT ISSKADVKIN GMNIQQTAQI GFTAKGSASA ELSASGQTTV KGAMVMIN
|
|---|
| |