| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2919 |
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| Symbol | |
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| ID | 4019444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3486348 |
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| End bp | 3488162 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637956970 |
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| Product | transcriptional regulatory protein-like protein |
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| Protein accession | YP_563920 |
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| Protein GI | 91794269 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.104867 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTATA GATTTAACGA ATTTGAATTT GACAGTGAGA GCTTGCTGCT GACGAAAAGT
GGCCTTACCT TGGCAATCCG TCACAACGAA GCTAAGGTCT TAGCGCTATT GCTTGAGCGC
GCCGACAAGG TGTTAAGCAA AGACGATATT TTGTCTCATG TTTGGCAAAA TAGACCTGTG
TCAGAACAAG CGGTTTTTCA AAATATCAGC CACTTGAGAA GTATCTTAGG TAACCAAGCC
ATCAAAACCT TTCCAAAACG GGGTTATCAA TGGCAACTTG AAACCGTGCG TGTTACCCCA
GACTCCCAGT CCTCAACAAT CCCAGTGCGA ACTCAATATC AACCTCTACC AGTGCCGAGT
CACAATAAAC GCCCCCGATG GTTATATTTC GCCTTGGCGA GCATGCTTAT GGTTAGCGTC
CTCGCCTTCT ATCTCCCCTG GCCGGACCAA CAAGAAAATA CTCATTCAAG GATTAGCATC
GCCTACATCC CAATGACTCA GCTCAATGGT ACTGAAAAGC TTTCGCTGGA TGATGATACA
GATTTTGATT TCACGACCTT AACTCAACTG GACGCGGCCC ATTTTGAAAC CTCAGCAGAT
CTTGAGTATC CCGCACTGGC AGGGACTCAT CCATTCGTAT TAACAGGTCA AATCCGCACT
CATAACCAGA GCTACTATTT GGATTTCCTG CTGAAAGGTC CATTTGCAGA TTGGCAAGGA
CAACTGACCA GCGCATCGGA GCAGGATCTA CTCCAGCAGC TTAAGCAGCA TTTAAATCAG
CCTGTTATCT ATGATTTGCT GAGCCAGCCT CAAGCCCCCG AACTCAAACA AGCCAACTTG
TCCATCGCCC ACCAGCAAGC GCCTGAGGAT CTGATAATTC TTGGCCAACT GATCTCGGTT
TATATCCAAA TGGATGAGCT AGATAAGGCC ATGGTCATGG CTGAAAAATT AGCAGTCTTA
GGGAAGCGCC AACACCAGCC TCAACAATTG GGAAATGGGC TGCTTTACCA GAGCGAAATT
TTAACCGCTA AATCCTTGTT TGAGCTAAGC GCGCAAAAAC TGGCGCTAGC CATTGAGCAT
TTTGAAACCA TAGCGGATTT AAAGCGTCAG GCTGATGCCT GGAATGCCCA ATCATGGTTA
GATCATCAAA ATCATGATTA CCCAGCAGTT AAAGCCAGTT TACTTAAGTC TGCTCAACTG
GCTTTAACTG CCAAGGATAA GGCGCGGGAA TTACATGCAT TGACTTACCT GTCGATAATG
GCCAGTAAAC ATAAGCAAGA GCAGGATAAA TATCTTTACT TACAGCAAGC TGAAGATAAA
ATGAAAGCTT ATCAACTCCC CAGTTACCAT TTTGCTAAGA TCCCTTTTCA TTACGCTATC
TTTGCCAGTA ATGCCGCGGC GAAAGAGCCA CATTTAAAGC AAGTGCTGGA GTTTACCGCC
CTCACACCGG ATCACTGGGT TGCTCAATCA AGCCGTAAGC AGTTAATACA CTATTACCTG
AAACACCGTA GGCTAATGCA AGCACAAGCG TTAGTTGAAA ACCTAGCAAC AGATAATGCC
CACAACTCTT ATCTTAAAGC CCTATTGGCC CAAGCTCAGC AGCAAAGCCC TTCAATGCTA
GAACATGCCA AACGCGCATT TGAGCAAGCA CGGCTAGCCG GTGAGCGCCT GCTTAGTTTG
GATGCCGCAC TACTCTTGTG CACCACCCAA AATCCGCAGG TCAATTATGA TTTTTATTCC
CAATACATAG ATGAGAATGC AACCTCCTAT TGGCGGGAAA TCAATGAATT AAGCCTGGTG
GCACTTAAAC TTTAA
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| Protein sequence | MNYRFNEFEF DSESLLLTKS GLTLAIRHNE AKVLALLLER ADKVLSKDDI LSHVWQNRPV
SEQAVFQNIS HLRSILGNQA IKTFPKRGYQ WQLETVRVTP DSQSSTIPVR TQYQPLPVPS
HNKRPRWLYF ALASMLMVSV LAFYLPWPDQ QENTHSRISI AYIPMTQLNG TEKLSLDDDT
DFDFTTLTQL DAAHFETSAD LEYPALAGTH PFVLTGQIRT HNQSYYLDFL LKGPFADWQG
QLTSASEQDL LQQLKQHLNQ PVIYDLLSQP QAPELKQANL SIAHQQAPED LIILGQLISV
YIQMDELDKA MVMAEKLAVL GKRQHQPQQL GNGLLYQSEI LTAKSLFELS AQKLALAIEH
FETIADLKRQ ADAWNAQSWL DHQNHDYPAV KASLLKSAQL ALTAKDKARE LHALTYLSIM
ASKHKQEQDK YLYLQQAEDK MKAYQLPSYH FAKIPFHYAI FASNAAAKEP HLKQVLEFTA
LTPDHWVAQS SRKQLIHYYL KHRRLMQAQA LVENLATDNA HNSYLKALLA QAQQQSPSML
EHAKRAFEQA RLAGERLLSL DAALLLCTTQ NPQVNYDFYS QYIDENATSY WREINELSLV
ALKL
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