| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2863 |
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| Symbol | |
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| ID | 4019386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3419700 |
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| End bp | 3420674 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637956913 |
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| Product | pseudouridine synthase, RluD |
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| Protein accession | YP_563865 |
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| Protein GI | 91794214 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00218841 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAAG AGATTAATCT AAAAAGCGAG ATCACAGCAA CACAAACAGG CTTGAGATTA
GACCAAGCTT TGGCCGAGTT GTTCCCTGAC TATTCCCGCA CGCGCATCAA AGAATGGATC
TTATCTGGTG CAGTTTATGT CGACGGTGTA AAAGTCGACA AGCCTCGCGA GAAGGTACTA
GAGTCGCAAC AAATTGAGAT AGAAGCAACA TTTGAAGAAG AAGTTAAGGC AAAAGCGCAA
GCAATTGACT TAAATATCGT CTACGAAGAT GATCATATCA TTATCGTTAA TAAGCAAGCC
GGTCTTGTGG TACACCCAGG TGCAGGTAAT GCCGATGGCA CTTTGATGAA TGCGTTATTG
CATCATTGTC CTGCCATTGA AATGGTGCCT AGGGCGGGCA TTGTGCACCG TTTAGATAAA
GACACCACAG GTTTAATGGT GGTGGCTAAG ACGGTTGAAG CACAAACTCA CTTGGTCGCT
GCTTTGCAGG CCCGTGAAAT AGTGCGTGAA TATGAAGCCA TAGTCCTTGG TACTATGACA
GCCGGCGGCA CAGTGGATGA ACCCATTGAA CGTCATCCGA CTAAGCGTAC TCAGATGTCA
GTGCAGCATG GAGGCAGACC TTCGGTGACG CATTACCGTG TTTCTGAGAA GTTTCGTGCT
CATACCCGTT TGCGTTTACG CTTAGAAAGC GGTCGTACTC ACCAAATCCG TGTACACATG
GATTACATTG GTCACGTATT GGTTGGCGAT CCTGTCTATG GTGGCCGTCC CAAACCGCCT
AAAAATGCGA GCCCAGAATT TTTTGATATC TTGAAAAACT TTGGCCGTCA GGCTCTGCAT
GCGGTTAGGC TTGAGCTAGC TCATCCATAC ACACATGAAA TCATGAGCTG GCAAGCACCT
ATCCCTGAAG ATATGGTGAT GCTGACTAAA GCACTGCGTA AAGATACCGA AGAGAATCCA
ATTCAGTATC TTTAA
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| Protein sequence | MTQEINLKSE ITATQTGLRL DQALAELFPD YSRTRIKEWI LSGAVYVDGV KVDKPREKVL
ESQQIEIEAT FEEEVKAKAQ AIDLNIVYED DHIIIVNKQA GLVVHPGAGN ADGTLMNALL
HHCPAIEMVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVA ALQAREIVRE YEAIVLGTMT
AGGTVDEPIE RHPTKRTQMS VQHGGRPSVT HYRVSEKFRA HTRLRLRLES GRTHQIRVHM
DYIGHVLVGD PVYGGRPKPP KNASPEFFDI LKNFGRQALH AVRLELAHPY THEIMSWQAP
IPEDMVMLTK ALRKDTEENP IQYL
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