Gene Sden_2587 details

Gene Information

• Locus tag: Sden_2587
• ID: 4019104
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 3096817
• End bp: 3098682
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637956631
• Product: GGDEF domain-containing protein
• Protein accession: YP_563589
• Protein GI: 91793938
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.21731
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCCTA GTGTTATAAC TCTCTTGTTT GTATTGGTTT TTCTATGGGA AGGGAAGGCG 
TTAGCTCAGG ATAATAATCA AACTAGGATT GAACAAATCA AACAGACGCT TGCTGAAATA 
GCCAGCCCTG AAGATAAGTT AACCTACCTG AGCGCCAAGT CATCCCTAGT TGAAGGCTTA 
TCTGGGCTAG AGCAAGGACA ATTTTTACAT TTATTGGCAG GGGTACAAGA AGAGTTACAA 
CAGCTTGATG GCGCTATAAT TAGCTACACC CAAGCCATAG CCATACTTGA ACAGATGCCT 
TTGAATCCAT TGTTGGTTCA TAGCTACTTA GAACGCTCCT ACATTAATTA CTTAAATAGC 
AATGACGCTA ATATCTATTG CCAAGATAGG CAGATAGGGC TTAGGTACGC GCGGCAATTA 
CAAGATCCAG AATTGACCGT TAAGGCGCTG AGTCTCGCGG CCTTTTGTTT TAATTCGGCA 
GAAAAATTTG ATGTAGGTAT TAAATTGCTG GATGAGGCAT TAGACATCGC CAAATTACAT 
CAGCTTTCTA ATAATCGCCA AGCCATGATT TATAACGCGG CAGCAGCCCT CTATAGGGAT 
CACGGATTAC ACCGACACGC CTTGGCTTTC TTCAAACATG CCTATGAGTT ATGGCTGGAA 
ATCGATGATA CTCAAGATAT CTTTAACATG CTGCACAATA TCATCGGCGA GACAATCAAT 
TTATTTCAAT GGGAGCAAGC GGACATCTAC TTAGAAGAAA TGGAGAAACT CACCGCAGCC 
AAGCCAGAAT TCAAAGATTT TAGATTTTTC TATCATTATA ATTTCGGCCG TAAATCCCTG 
TTTAGTTATG ATTTTACTCA GGCAATCTTA CATTTAGAGC AAGCGATAGC CTTACAGGCG 
ACCACTAACG AAGTATTTTT TGTACACACA AGCTTTGCTT TTTTATCCAT AGCATACATT 
CAAAGCGGTG ATAAAGAGCA GGCGGTGAAA TGGGCGAATG CATTCAATCA ATCTGCCAGT 
GTGTCAAGCA GCAAGCAAGA CTTGGTCATG AGCATGCAAG CCCTGGGGCT TTTAGGTCAG 
GACAAGCCAA TTGAGAGCGT GAATATTTTG CTCAAAACCA TTAATTATGA AAGGGAGAAG 
TTTGCTGATT TACTTAATAA CGCGGTGATT TTTTCAGCAT TAGATCACAA CTCAAAAGTC 
GCGGAACATG AAAATAGATT GTTAGAGAAG CAATTAGAAA TTAAACAATT GGAACTTAAG 
GCGCAGCAGG ATGAACAAGA AATTACCCGT TTAAGCTTGT GGTTGTTTGT GTTGCTGGTG 
GCGATTTTAT TGGGATTTTT AGGTTTTTTA TACCAATCGA GACGATTTTT TAAGCATCGC 
TCTCAAACGG ATTTTTTAAC CGGGATTGCC AGCCGTAGCT TTACCATGGA AGAAGGGGCT 
AAAGCTCTGG AGACTTGCCA TAAGCTCAAG CAACCTTTGG CCGTGGTGAT GTTAGACATA 
GACAATTTTA AGCATATCAA TGATTCCTAT GGCCACGATA TTGGTGATAT GGCCATAAGA 
GCCGTGGCTC AGCGCGCTAA GCACTGGCTT AAGCGAAACG ATATTTTAGG CCGTATTGGC 
GGGGAAGAGT TTTTATTAGT GCTGCCCAAC AACAACCAGC AGGAAGCCTT GTTAATTGCC 
GAGCGCCTCA GAGTAAGCAT CAACGAAAAG CTATTTAAGT TTAAGGGTGT TGAGCTTAAG 
TTTTCTATCA GCTTAGGGGT GGCGCTATCC AAACCTCAAC AAGGGTTTAA TGAGCAAGTC 
AAAAATGCCG ATCTGGCCCT GTATCAGGCG AAAAATGCCG GAAGAAATTG TGTGAGTATG 
GCCTAG 

 

Protein sequence

MSPSVITLLF VLVFLWEGKA LAQDNNQTRI EQIKQTLAEI ASPEDKLTYL SAKSSLVEGL 
SGLEQGQFLH LLAGVQEELQ QLDGAIISYT QAIAILEQMP LNPLLVHSYL ERSYINYLNS 
NDANIYCQDR QIGLRYARQL QDPELTVKAL SLAAFCFNSA EKFDVGIKLL DEALDIAKLH 
QLSNNRQAMI YNAAAALYRD HGLHRHALAF FKHAYELWLE IDDTQDIFNM LHNIIGETIN 
LFQWEQADIY LEEMEKLTAA KPEFKDFRFF YHYNFGRKSL FSYDFTQAIL HLEQAIALQA 
TTNEVFFVHT SFAFLSIAYI QSGDKEQAVK WANAFNQSAS VSSSKQDLVM SMQALGLLGQ 
DKPIESVNIL LKTINYEREK FADLLNNAVI FSALDHNSKV AEHENRLLEK QLEIKQLELK 
AQQDEQEITR LSLWLFVLLV AILLGFLGFL YQSRRFFKHR SQTDFLTGIA SRSFTMEEGA 
KALETCHKLK QPLAVVMLDI DNFKHINDSY GHDIGDMAIR AVAQRAKHWL KRNDILGRIG 
GEEFLLVLPN NNQQEALLIA ERLRVSINEK LFKFKGVELK FSISLGVALS KPQQGFNEQV 
KNADLALYQA KNAGRNCVSM A