| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2576 |
|---|
| Symbol | |
|---|
| ID | 4019093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3081998 |
|---|
| End bp | 3083266 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637956620 |
|---|
| Product | DEAD/DEAH box helicase-like protein |
|---|
| Protein accession | YP_563578 |
|---|
| Protein GI | 91793927 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTTA ATGCCCTCGG TTTATCCAGC CAACTACAAG ATGCCGTCAA AGAATGTGGT
TATGACGCCA CCACTCCCGT TCAACAGGCC GTTATTCCGG TTGCACTCCT TGGGCAAGAT
GTCTTAGCCA GCGCTGAAAC GGGCACAGGT AAAACCGCCG CTTTTGCCTT GCCGATTTTG
ATGAACTTAT CTCAAATTGA TACTCAGACA TTAACGCCAG AGCAAAGACT CAGAGCACTG
GTGATGACGC CGACTCGCGA ACTTGCGATT CAAATCGAGC AAAACTTTCT GAGTTACAGC
CGTTACCTTG AACTTAATAG CTTGGCAGTT TATGGAGGGG CGAGTATTAA CCCACAGCGT
AAAGCCTTAG CTCAAGGGGT AGATGTGCTG GTGGCAACCC CAGGTCGATT GTTTGATATT
ATTGGTCAGC ATGAGTTAGA TCTCTCCCAT GTGACGCATT TAGTGATAGA CGAAGCCGAT
CGCATGCTGG ATTTAGGCTT TGTGAAAGAC ATAGAAAAAG TGCAGCGCTT AGTGGCAAGG
CAGCGTCAGA CTATGATGTT TTCGGCCACC TTTTCCGATG AAGTACAAGT GCTTGCGCAA
AAAATGCTAA ACCAGCCGGC CATTTTCCAC CTTGCCAGCA GCACGACCGC CAGCACAGTA
AGCCAAGAAG TGTATTTGGT GGATAAAAGG CGTAAAGCGG AATTACTCTC AGAGCTTATT
GGCCGTAATA ACTGGCAGCA AGTGATGGTG TTTACCAGCA CTAAAGAAAC CGCTGAGCAT
TTATTATCTG AGCTAACACT TGATGGCCTT AAAGCCGCAG TGTTTCATGG TGATAAGTCT
CAAGGTGCGC GCAATAAAGC CTTAGAAGAG TTTAAGCAAG GTCAGCTGCG AATTTTGATA
GCCACAGATC TCGCCGCCAG AGGCTTAGAC ATTCAAGCGC TGCCCTTAGT GATCAACTTT
GAATTGCCAC CAGAGCCAGA AGATTATGTT CACCGCGTAG GCCGTACTGG CCGTGCGGGG
ATGGCGGGTC ACGCCATTTC TTTTGTGAGC CCAAATGAGC AGCAACTACT TATAGATGTA
GAAGCCCAAG TGGGGCTGAC ACTAGAGAGC AAGGTGTTAC CTGGTTACGA AGAAGGTGCG
CCGCTACCGG CTCGCTATCG TGACCTTGCT GATGCAAAAC CTAAGAAAGC CTTTAAGCAC
AAGCGCCCTA AACCTAGCCC GAACAAAGCG CCTACCCGTC ACGGTAAATA CGCTAAAGTT
AAAAAGTAA
|
|---|
| Protein sequence | MPFNALGLSS QLQDAVKECG YDATTPVQQA VIPVALLGQD VLASAETGTG KTAAFALPIL
MNLSQIDTQT LTPEQRLRAL VMTPTRELAI QIEQNFLSYS RYLELNSLAV YGGASINPQR
KALAQGVDVL VATPGRLFDI IGQHELDLSH VTHLVIDEAD RMLDLGFVKD IEKVQRLVAR
QRQTMMFSAT FSDEVQVLAQ KMLNQPAIFH LASSTTASTV SQEVYLVDKR RKAELLSELI
GRNNWQQVMV FTSTKETAEH LLSELTLDGL KAAVFHGDKS QGARNKALEE FKQGQLRILI
ATDLAARGLD IQALPLVINF ELPPEPEDYV HRVGRTGRAG MAGHAISFVS PNEQQLLIDV
EAQVGLTLES KVLPGYEEGA PLPARYRDLA DAKPKKAFKH KRPKPSPNKA PTRHGKYAKV
KK
|
|---|
| |