| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2561 |
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| Symbol | |
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| ID | 4019078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3065895 |
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| End bp | 3066905 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637956605 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_563563 |
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| Protein GI | 91793912 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAAAGC GTACAATAAC CGTGATCCCA GGTGATGGGA TTGGCCCGAG CATCATAGAT
TCAGCATTAA AAATCCTCGA CAAAGCAGGA TGTAATTTCG AATATGAATT CGCCGATGCA
GGCCTTGTTG CTCTAGAAAA GCACGGTGAG CTAGTACCAC AACGTACATT AGATCTTATT
GAAAAAAACC GCATCACCCT AAAAGGCCCG TTAACCACGC CAGTAGGTGA AGGTTTCACT
TCAATTAACG TAAGTTTACG TAAAAAGTTC GGCCTATATG CCAACGTGCG CCCAGTCTTG
TCTTTTAAAG GCACTCAGGC TCGCTACGAA AATATCGACA TCATCACAGT GCGTGAAAAC
ACCGAAGGCA TGTACTCAGG CCTAGGCCAG AAAGTGTCTG AAGATGGCGA GACAGCAGAA
GCCACCAGTA TCATCACGCG TCAAGGCGCC GAGCAGATCA CCACCTTCGC TTACGAGCTC
GCTCGCAAAG AAAACCGTAA GAAAGTGACC ATAGTTCACA AAGCTAACAT CATGAAGTCT
ACCTCAGGGT TATTCTTGAA AGTGGCTCGT GAAGTGAGCC TTCGCTATCC AGACATCACC
ACAGAAGAGA TGATCGTCGA TGCGACTTGC ATGAAACTTG TGATGAACCC AGAAAATTTC
GACGTGATAG TGACCACCAA CTTATTCGGC GACATTTTAT CTGACTTATG CGCAGGTCTA
GTGGGCGGTT TAGGCATGGC CCCTGGGGCA AACATTGGTC GTGATGCGGC AATTTTCGAA
GCCGTACACG GCAGTGCACC GGATATAGCA GGTAAAAATC TAGCCAACCC AACCTCGGTT
ATCTTAGCGT CTATCCAAAT GCTTGAATAT TTAGGCATGG CCGATAAGGC AGAGATGATC
CGCAGCGCCG TGTCGGCTGT GATTGAAGAA GGCGATCGCA CCACCCGCGA TTTGGGTGGC
ACTCACGGTA CCACCGACTT CACTCAAGCA GTATTAGATC GTTTAGTCTA A
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| Protein sequence | MSKRTITVIP GDGIGPSIID SALKILDKAG CNFEYEFADA GLVALEKHGE LVPQRTLDLI
EKNRITLKGP LTTPVGEGFT SINVSLRKKF GLYANVRPVL SFKGTQARYE NIDIITVREN
TEGMYSGLGQ KVSEDGETAE ATSIITRQGA EQITTFAYEL ARKENRKKVT IVHKANIMKS
TSGLFLKVAR EVSLRYPDIT TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGRDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKAEMI
RSAVSAVIEE GDRTTRDLGG THGTTDFTQA VLDRLV
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