| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2481 |
|---|
| Symbol | |
|---|
| ID | 4018981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2957684 |
|---|
| End bp | 2958790 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637956509 |
|---|
| Product | sigma-54 factor, interaction region |
|---|
| Protein accession | YP_563484 |
|---|
| Protein GI | 91793833 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAATT CATACCAACA AGATAACCTT ATCGGTCAAT CCAATGCGCT GTTAGAAGTA
TTAGAGCACG TTTCTAAGAT AGCGCCCCTT TCCAAGCCTG TGTTGATCAT AGGCGAGCGG
GGTACTGGTA AAGAGCTTAT CGCCGAGCGC CTACACTACT TATCCCCCCG CTGGGATCAA
GCTTTTATTA AACTCAATTG TTCATCTTTG AGTGAAAACT TATTAGAAAG TGAACTCTTT
GGCCATGACT CAGGGGCATT TACTGGGGCT AAGGGTAAGC ACGAAGGCCG TTTCGAGCGC
GCCGATGGCG GCACTCTCTT CTTAGATGAG CTGGCAAACA CTTCAGGGCT TATTCAAGAG
AAGCTGCTTA GAGTGATTGA ATACGGTGAG TTCGAGCGTG TGGGTGGCAG TAAAACAGTG
CAAACCGATG TTCGATTAAT TTGTGCGGCT AACGAAGATT TACCCACACT AGCTGAACAA
GGTGAGTTTC GTGCCGATTT GCTCGATAGA CTGGCATTCG ATGTGATAAC CCTGCCGCCA
CTGCGTTGTC GCACCGAAGA TATCATGCCT CTGGCAGAGC ACTTTGCGGT CAGTATGGCC
AGACAATTAG GCTTAGATTT TTTCCCAGGC TTTAGCCCCA TCGCCGTCGA ACAATTGATG
ATGCACACCT GGCCGGGTAA TATTCGTGAG CTTAAAAATG CGGTTGAACG CAGCGTCTAT
CGTAGCGGCC AAGAAGAGGC CATAGATGAA ATCATTGTCG ATCCCTTCGC TTCTCCCTAT
CGCCCCACTA ACAGAGTAAA AACCTTAAGT CGTCAACAGG TTCAACCCCA AGCGTTAAGT
ACAACGCCCA ATTCAGCTCA CGCTATCACT GCTGAAACAA ACAGCCAAAC TTCCGAGCCT
ACCTTGGAGA TGCCATTATT TCGAGAGGCA GCGTTAAACT TCCCCATTAG CTTTAAGGAA
CATACAGAGC AGTTTGAGGT TGATTTAATT AATCAAGCCC TTAGCGAGAG CCAATTTAAC
CAGAAGAAAA CCGCCGATCT GCTGGGCCTT AGCTACCATC AACTCAGGGG GATCTTAAAG
AAATACAATT TATTGGATAA GGCATAA
|
|---|
| Protein sequence | MANSYQQDNL IGQSNALLEV LEHVSKIAPL SKPVLIIGER GTGKELIAER LHYLSPRWDQ
AFIKLNCSSL SENLLESELF GHDSGAFTGA KGKHEGRFER ADGGTLFLDE LANTSGLIQE
KLLRVIEYGE FERVGGSKTV QTDVRLICAA NEDLPTLAEQ GEFRADLLDR LAFDVITLPP
LRCRTEDIMP LAEHFAVSMA RQLGLDFFPG FSPIAVEQLM MHTWPGNIRE LKNAVERSVY
RSGQEEAIDE IIVDPFASPY RPTNRVKTLS RQQVQPQALS TTPNSAHAIT AETNSQTSEP
TLEMPLFREA ALNFPISFKE HTEQFEVDLI NQALSESQFN QKKTADLLGL SYHQLRGILK
KYNLLDKA
|
|---|
| |