| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2453 |
|---|
| Symbol | |
|---|
| ID | 4018952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2923653 |
|---|
| End bp | 2925188 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637956480 |
|---|
| Product | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase |
|---|
| Protein accession | YP_563456 |
|---|
| Protein GI | 91793805 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0134] Indole-3-glycerol phosphate synthase
[COG0135] Phosphoribosylanthranilate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACTC ATGCTGAACA AAAAAACCGT ATCAATACTG ACTCAAGCAC CAAAGCGTCC
AACGTACTGA CTCGAATAGT TGACACCAAA GCGGCTCACA TAGCCGCCTT AAAGCAGCGT
TTCCCTGAAC ACAGCTTGCA GCCAAAAATA TCTGATAGAA GCTTATTCGA TGCCCTAAAG
CAGCCCAATG CCCAGTATAT TTTTGAATGT AAAAAGGCCA GCCCTTCCAA GGGCTTAATT
CGCCCAGACT TTGATGTAGT AGCCATTGCC GATATTTATG GCAAGTATGC GGCGGGGATT
TCTGTGTTAA CCGACGAGGC ATTTTTCCAA GGGGACATGG ATTACATCCC TAAAGTACGC
GCGCGCGTCA GTCAGCCTAT ATTATGTAAA GACTTTTTTG TTGACCCCTA CCAAATCAAA
CTTGCCGCCC ACCAAGGCGC CGATGCGGTG CTATTAATGC TGTCGGTGCT CGATGATGAG
CAATATAAAA TCCTGGCTCT TGAGGCGCAA AAGTATCAAC TCGATGTCTT GACAGAGGTC
AGTAATCAAG CGGAAATGAC CCGCGCCATT AACCTTAATG CCACCATTAT CGGGATTAAC
AATCGCAATC TTAGGGATTT ATCTACAGAT TTGGCCACTA CAGAGCTCCT TGCGCCTCAA
ATCCCTGCTG ACAGAGTCGT CATCAGCGAG TCGGGCATTT ATACTCACGA CCAAGTGCAG
CGTTTAAATC CTTTGGTGGA TGGCTACTTG GTTGGCAGCT CAATAATGGC TCAAGAAGAC
ATAGATTTGG CCTGTCGCCA GCTTATTTTT GGCAATAACA AAGTTTGCGG CCTCACTCGC
ATTGAGGATA TAACCGCTGC AGCCCAAAGT GGCGCCGTTT TTGGCGGGTT AATTTTTCAT
CCAAGCTCAA AGCGCTATGT AGAATTAGCC AACGCCAAAG AATTGATTAA GCAGATGAAA
GTGCAAAACA TCAGCCTGAA AATGGTCGGG GTGTTTGTTA ACGCAAGCCA TAATGAGATG
GTCGAGGCTG CAAAGGAGTT AAAGCTTTTC GCCCTGCAAT TGCATGGCGC AGAAACCGCT
TCAGATATCG CTCAATTGGC CCAGACATTA AAGGCCAAAA ATATTGAATG CGAGATCTGG
AAAGCCGTCG CAGTGGACAG CCAAAGCGGC GAGCTAGGGC CAAGACCTGT TGGCGCCAGC
CGTTATTTGT TCGACAGTAA AACAGCACCT GCCACTAACA TGGGCGGCGC TCAATTTGAC
GGTGCTCAAT TTGGAGACTC TCAATTTGGC GGTGCTCAGT TTGGAGGAAC GGGGCAAACC
TTTGATTGGC AGCAATTGTC GCTCACTGCC GATGAAAAAT CCCGCGCCAT GCTGGCAGGT
GGACTTAATG CAGACAACAC AGCCCATGCC AAACAACAAG GGTTTTATGG CTTAGATTTT
AACTCTGGGC TTGAGCTAAG CCCAGGCATC AAAGACGCCA GCAAGATAGC TAAGGCCTTT
GCTGTACTTA AGCAAAGTGA ACCCAGAAAA AATTAA
|
|---|
| Protein sequence | MNTHAEQKNR INTDSSTKAS NVLTRIVDTK AAHIAALKQR FPEHSLQPKI SDRSLFDALK
QPNAQYIFEC KKASPSKGLI RPDFDVVAIA DIYGKYAAGI SVLTDEAFFQ GDMDYIPKVR
ARVSQPILCK DFFVDPYQIK LAAHQGADAV LLMLSVLDDE QYKILALEAQ KYQLDVLTEV
SNQAEMTRAI NLNATIIGIN NRNLRDLSTD LATTELLAPQ IPADRVVISE SGIYTHDQVQ
RLNPLVDGYL VGSSIMAQED IDLACRQLIF GNNKVCGLTR IEDITAAAQS GAVFGGLIFH
PSSKRYVELA NAKELIKQMK VQNISLKMVG VFVNASHNEM VEAAKELKLF ALQLHGAETA
SDIAQLAQTL KAKNIECEIW KAVAVDSQSG ELGPRPVGAS RYLFDSKTAP ATNMGGAQFD
GAQFGDSQFG GAQFGGTGQT FDWQQLSLTA DEKSRAMLAG GLNADNTAHA KQQGFYGLDF
NSGLELSPGI KDASKIAKAF AVLKQSEPRK N
|
|---|
| |