| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2434 |
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| Symbol | |
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| ID | 4018933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2898669 |
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| End bp | 2900333 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637956461 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_563437 |
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| Protein GI | 91793786 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGCAC AGTTAATGAC CTCGATAACT CCCCGTAAGG CCCAAGCGTC AGAAGACAGC
ATGTTACGTA TTTTTACCGT CCCTGAAGAC GCCGAGTCTA CGTTAAGCAT CATAGAACAA
AAGTTATCTG AAGATCTTGC TGGCTTCCTT GGTAACAGCA TAGCGGCGTT AGAAAAACCA
TTAAGTGAAA TAGAAACCGA TTTTCAAGCG TTTCAAATCC CTACAGCACC TCGCTTTGTC
TCTGACTATA CCGATGAAAT TATGCAGAAC TTGGTGGCTC ACTCGGTCCA TACTGCGGCG
CCAAGTTTTA TTGGCCATAT GACATCAGCG CTGCCCTATT TTGTGCTGCC CTTGTCAAAA
ATGATGGTCG GTCTCAATCA GAATTTGGTA AAAATTGAAA CTTCCAAAGC CTTTACCCCC
TTAGAACGCC AAGTGTTAGG TATGATGCAC CACCTTGTTT TCAGTCAAGA TGGCGATTTT
TATCAACAGT GGATGCACAG TGCCAATCAT TCTCTCGGCG CCTTTTGCTC CGGCGGCACA
GTCGCCAACA TCACGGCGCT GTGGATAGCG CGAAACCGCT TGCTTAAAGC CGATGGTAAT
TTTAACGGTG TCAATCGTGA AGGCATGCTA AAAGCCCTGC GTCATTATGG CTTTGATGAT
ATTGCCATTT TGGTCTCAGA GCGAGGTCAT TATTCCCTTG GCAAGGCCGT AGATCTACTA
GGCATTGGCC GCGATAACAT TATCAGCATA GCCACAACCG CAGACAACAA AGTGGATGTT
GAGGCCATGC GCCTCGCTGC AAAAGCGCTT GCCAGCAAGA ATATCAAAGT CATGGCCGTA
GTGGGTGTGG CGGGTACCAC AGAAACCGGC AATATCGACC CACTCACCGA GCTTGCCGCC
TTAGCTCAGG AGCTTGATTG TCACTTTCAT GTGGATGCGG CTTGGGGCGG CGCGAGTTTA
TTGTCTAAAA AGTATCGACA CTTGCTTAAG GGCATAGAGC TTGCAGATTC TGTCACCATA
GATGCCCACA AACAAATGTA TGTGCCCATG GGGGCCGGTA TGGTGTTGTT TAAAGACCCT
GAACTTGCCA ATGCCATAGT CCACCATGCT GAGTACATTT TACGGGTGGG TTCAAAAGAT
TTAGGCAGTC AAACCTTAGA AGGCTCCCGC CCTGGCATGG CCATGATAGT GCATGCTTGC
TTGCAGATAA TCGGTCTTGA AGGGTATGAA ATCCTCATCA ATAACAGCCT AGAAAAAGCC
CGTTATTTCA GTGAGCTCAT TAAAAAATCC CCTGACTTTG AACTAATCAC TGAGCCTGAG
CTGTGCATTC TCACCTACCG CTACGTGCCC AGTACAGTGC AATTAGCCAT GAGTGATGCC
TGTCAACGCC AAGATTGGCA TGCGTTAGCC CAATTCAATG AATGCTTAGA TGGTTTGACT
CAATTTATTC AAAAGCATCA GCGTGAACAG GGCAAGTCTT TCGTGTCACG AACTCGCATA
CAGCCAGCCC GCTATAACAG GCAGCACACC ACAGTATTTA GGGTCGTGCT TGCCAACCCC
TTAACTGGAC TTGAGATCTT GCAGGGCGTC TTAGCAGAGC AGCAAGAAAT TGCCGCTTTA
GATAACGAAT TTTTGCCCCA GTTATTAGCA TTAGCCAGCG CCTGA
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| Protein sequence | MMAQLMTSIT PRKAQASEDS MLRIFTVPED AESTLSIIEQ KLSEDLAGFL GNSIAALEKP
LSEIETDFQA FQIPTAPRFV SDYTDEIMQN LVAHSVHTAA PSFIGHMTSA LPYFVLPLSK
MMVGLNQNLV KIETSKAFTP LERQVLGMMH HLVFSQDGDF YQQWMHSANH SLGAFCSGGT
VANITALWIA RNRLLKADGN FNGVNREGML KALRHYGFDD IAILVSERGH YSLGKAVDLL
GIGRDNIISI ATTADNKVDV EAMRLAAKAL ASKNIKVMAV VGVAGTTETG NIDPLTELAA
LAQELDCHFH VDAAWGGASL LSKKYRHLLK GIELADSVTI DAHKQMYVPM GAGMVLFKDP
ELANAIVHHA EYILRVGSKD LGSQTLEGSR PGMAMIVHAC LQIIGLEGYE ILINNSLEKA
RYFSELIKKS PDFELITEPE LCILTYRYVP STVQLAMSDA CQRQDWHALA QFNECLDGLT
QFIQKHQREQ GKSFVSRTRI QPARYNRQHT TVFRVVLANP LTGLEILQGV LAEQQEIAAL
DNEFLPQLLA LASA
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