Gene Sden_2397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2397 
Symbol 
ID4018895 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp2849505 
End bp2850182 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content45% 
IMG OID637956424 
Productregulatory protein, TetR 
Protein accessionYP_563400 
Protein GI91793749 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGACTG AAAATATATT TAAGCCCCAG CAACAGCGCA GCCAAGATAC TCAGCGTAAG 
TTAATGGCCG CGCTGCATTT GTGCCTAAAA GATAAATTTT TTGAGCACAT CAGCATTAAA 
GAACTTGCCG ATCATGCTGG GGTCTCGGTA GGCACTTTTT ATCGGCGTTT TAAAGATAAA 
GAATCGTTAT TGCCTCTGCT ATACCAAGAT TTTGGCAATG AGTTAAACTT GTGGGTCACT 
GAGCTTGAAA GCCGCAAATT TACCAGTTTA AGGCAGGCAC TTATTTGTAT CAGCCAGGAG 
ACGCAGCAGT TCTTGGTGTC CAAAAAATGC GTGTTTCGCA CCTTGCATTT AAATTCGCGC 
TTGCGCTCGG AAATCTTAGT GGCCGACAAG GTGGTGGACC GCAAGCAAGT CTATCGCCGT 
TTGGCGACGA TATTTGTTAA CGCCAATCAA GGGCCTGCTA ATTTATATGG CCAAGAGCTG 
TCTGAAGCGC TGCAGTTAGC CTTGCTTAAA GCCGATACCG CTGTGTATAT CATGGTCAAC 
ACCTTGCTCG ATAAAGTGCT ATATCCAGAA TTAACTCCAG CCATCGCCTG TGAGCTGGAT 
GCTGAAGCCT TCAGTGGTGA ACTTTCAACG GTATTGCTGG CCTACCTTCA AGTGAAAACT 
GTTGCTATAC CGAGTTAA
 
Protein sequence
MSTENIFKPQ QQRSQDTQRK LMAALHLCLK DKFFEHISIK ELADHAGVSV GTFYRRFKDK 
ESLLPLLYQD FGNELNLWVT ELESRKFTSL RQALICISQE TQQFLVSKKC VFRTLHLNSR 
LRSEILVADK VVDRKQVYRR LATIFVNANQ GPANLYGQEL SEALQLALLK ADTAVYIMVN 
TLLDKVLYPE LTPAIACELD AEAFSGELST VLLAYLQVKT VAIPS