| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2328 |
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| Symbol | |
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| ID | 4018821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2752850 |
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| End bp | 2755537 |
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| Gene Length | 2688 bp |
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| Protein Length | 895 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637956350 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_563331 |
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| Protein GI | 91793680 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.664503 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAACAA TTTTCTATCT GTTTGAGACT TTTGGCGCAA ATAAAACTAT GGGTAAATCG
CTAGTTATTG TCGAATCGCC GGCCAAGGCC AAGACTATTA ATAAATATCT TGGTAAAGAA
TTCATCGTAA AGTCCAGTGT GGGTCACATA CGTGATCTGC CGACTTCATC CACCTCTGAC
GGCAGTGCCA GCACCAAAAC TGCCGCCGAA GTCAGAAAAA TGTCACCCGA AGAGAAAGCC
AAATATAAGC TTATCCGCGA TAAGCAGGCG CTGGTCTCTC GCATGGGCAT CAACCCAGAA
AAAGGCTGGG CTGCAAAATA CCAAATCTTG CCTGGCAAGG AAAAGGTCGT CAAAGAGCTT
AAAGCGTTAG CCGAGTCTGC TGACCAAATA TATCTCGCAA CCGATTTGGA CCGTGAAGGG
GAAGCCATCG CCTGGCATTT ACAGGAGATC ATAGGTGGTG ATGCTTCACG GTATCAAAGA
GTTGTGTTTA ACGAGATCAC TAAAAGTGCT ATCCAAGATG CCTTTAGTCA GCCGTCAAGT
TTAGATACCA ATATGGTTAA CGCTCAACAG GCGCGTCGAT TCCTCGACCG CGTTGTGGGC
TTTATGGTGT CACCACTCTT GTGGAAAAAA GTGGCTCGTG GCTTGTCTGC CGGGCGAGTA
CAATCGGTTG CCGTGCGCTT AGTGGTTGAA AGAGAAAGCG AAATCAAAGC ATTTGTGCCT
GAGGAATTCT GGGACATCAA TGCCGAGCTG AATACTGCCG CGAGCCAAGT ACTTAAAATG
CAAGTGGCCA AGTACCAAGG CGAAAGCTTT AACCCCATTA ACAAGGCGCA AGCTGAACAG
GCGGTTGAAC GATTAACCAA TGCCAGCTAT TCAGTGAGCG CACGGGAAGA TAAAGCCACC
TCCAGCAAAC CGTCGGCGCC TTATATCACG TCTACCTTGC AACAAGCGGC CAGTACGCGT
TTGGGCTTTG GGGTGAAAAA GACCATGATG ATGGCCCAGC GCTTGTACGA AGCGGGCCAC
ATTACCTATA TGCGTACCGA CTCGACCAAC TTGAGTCAGG AAGCGGTGGA AAATGTCCGC
GAGATGATAG CGGCTGATTT TGGCACTAAG TACCTTCCTG CCGATCCTAT CCGCTATGGC
AGCAAAGAAG GCGCACAAGA GGCTCACGAA GCCATACGGC CCTCAAACGT GCAAGTGCAG
TCGGCAAGCT TAACTGACAT GGAGCGTGAT GCTCAGCGTC TGTATGAGCT GATTTGGCGC
CAATTTGTGG CCTGTCAGAT GACACCTGCC CAATATGATG CTACCCGTCT TACGGTTAAA
GCCGGCGACT ATGAGCTTAA AGCCAGCGGC CGTACCTTAA GGTTCGATGG TTGGACTCGT
GCTCAGCCAC CTATGGGTAA GAAGAACGAA GAAGACAACA CCTTACCCCA TGTGGACAAA
GGCGAGTCAC TGACACTTAA CACCTTAGCG CCTAAACAGC ACTTTACTAA GCCGCCAGCA
CGTTATGGTG AAGCCTCATT AGTCAAAGAG CTTGAAAAGC GCGGCATTGG TCGTCCATCG
ACCTATGCGA CGATTATTTC AACCATTCAA GACAGGGGCT ACGTTAAAGT CGAAAACCGC
CGTTTCTTCG CCGAGAAAAT GGGTGAAATC GTCAGTGACC GTCTGGTTGG CAGCTTTAAG
GAACTGATGA GCTACGATTT CACCGCCAGC ATGGAGCAAA CCTTAGATGA TGTTGCTCAA
GGCAAGCTGG AATGGAAACA AGTTCTCGAT GGCTTCTACG GTGATTTTAC TAAGCAGTTA
GAAAAAGCGG AGCTAGACCC AGAAGACGGT GGCATGCACC TCAATCAAAT GGTGCTCACC
GAGGCGATTA GCTGCCCAAC CTGTGATCGT CCCATGGGCA TTCGTACTGG CACAACTGGG
GTGTTCTTAG GATGTTCAGG TTACGCCTTG CCGCCAAAAG AGCGCTGCAA AACCACGATG
AACTTAACCC CAGGGGAAGA AGCGGTCAGC GATGCTGAAG ATGCTGAAAC CGATGCGCTG
CGTGCTAAGC ATCGCTGTGG TAAGTGCGGT ACCGCCATGG ACAGTTACTT GATTGACGAA
AAGCGTAAGC TGCATGTCTG CGGTAATAAC CCAAGTTGTG ATGGTTATGA AGTCGAAGCG
GGTCAGTTTA AAATTAAGGG TTATGAAGGC CCATTAATTG AATGCGATCG TTGTGGTAAT
GACATGGAGC TTAAAAATGG CCGTTTCGGT AAATATTTTG GTTGTACCAA CAGCGAATGT
AAAAATACCC GCAAGCTGCT AAGAAGCGGT GAAGCTGCGC CGCCAAAAGA AGATCCTATC
TTCTTACCTG AGCTTAAGTG CACTAAATCC GATGCTCACT TTGTGCTACG TGATGGCGCT
GCGGGGATAT TTATGGCCGC CAGTACCTTC CCTAAGTCTC GGGAAACACG AGCGCCTTTA
GTGGAGGAGT TGGTTAAGTA TCGCGAGCTA CTTTGGCCTA AATACCAGTA TCTTGCCGAT
GCGCCGGTTG AAGATGATGA CGGTAATAAA GCCGCAGTGA AGTTTAGCCG TAAGACCAAA
GAGCAATACG TGGCCACTGA GGTTGACGGT AAGGCAACGG GTTGGACTGC TAAGTATCAT
GGCGGTAAAT GGTTGGTTGA ACAAACCAAG AAAAAAGCCA AGAGTTAG
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| Protein sequence | METIFYLFET FGANKTMGKS LVIVESPAKA KTINKYLGKE FIVKSSVGHI RDLPTSSTSD
GSASTKTAAE VRKMSPEEKA KYKLIRDKQA LVSRMGINPE KGWAAKYQIL PGKEKVVKEL
KALAESADQI YLATDLDREG EAIAWHLQEI IGGDASRYQR VVFNEITKSA IQDAFSQPSS
LDTNMVNAQQ ARRFLDRVVG FMVSPLLWKK VARGLSAGRV QSVAVRLVVE RESEIKAFVP
EEFWDINAEL NTAASQVLKM QVAKYQGESF NPINKAQAEQ AVERLTNASY SVSAREDKAT
SSKPSAPYIT STLQQAASTR LGFGVKKTMM MAQRLYEAGH ITYMRTDSTN LSQEAVENVR
EMIAADFGTK YLPADPIRYG SKEGAQEAHE AIRPSNVQVQ SASLTDMERD AQRLYELIWR
QFVACQMTPA QYDATRLTVK AGDYELKASG RTLRFDGWTR AQPPMGKKNE EDNTLPHVDK
GESLTLNTLA PKQHFTKPPA RYGEASLVKE LEKRGIGRPS TYATIISTIQ DRGYVKVENR
RFFAEKMGEI VSDRLVGSFK ELMSYDFTAS MEQTLDDVAQ GKLEWKQVLD GFYGDFTKQL
EKAELDPEDG GMHLNQMVLT EAISCPTCDR PMGIRTGTTG VFLGCSGYAL PPKERCKTTM
NLTPGEEAVS DAEDAETDAL RAKHRCGKCG TAMDSYLIDE KRKLHVCGNN PSCDGYEVEA
GQFKIKGYEG PLIECDRCGN DMELKNGRFG KYFGCTNSEC KNTRKLLRSG EAAPPKEDPI
FLPELKCTKS DAHFVLRDGA AGIFMAASTF PKSRETRAPL VEELVKYREL LWPKYQYLAD
APVEDDDGNK AAVKFSRKTK EQYVATEVDG KATGWTAKYH GGKWLVEQTK KKAKS
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