| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2280 |
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| Symbol | |
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| ID | 4018772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2703707 |
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| End bp | 2705617 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637956302 |
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| Product | arginine decarboxylase |
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| Protein accession | YP_563283 |
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| Protein GI | 91793632 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
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| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000837435 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGATT GGACAATCGA AGATGCCCGC GCAGGCTACA ATGTGACTCA TTGGAGCCAA
GGCTTTTACG GTATCGGTGA AGCTGGCGAG GTGACAGTAT CGCCCGATCC ATTAAACCCA
TCCAACAAGG TCGCCTTAGA TACACTGGCA CAAGATTTGG TCCAAGCAGG TATTGCCTTA
CCTGTATTAG TGCGTTTCCC GCAAATTTTG CACCACAGAG TCGAAAGCCT GTGTGATGCA
TTTAACCAGG CCATTCAAAA ATACGAGTAT CAAAACGATT ACTTATTGGT GTACCCCATC
AAGGTAAACC AACAGAAAAC GGTAGTTGAA GAAATTCTAG CCAGCCAAGT CTCTAAAGAA
GTACCTCAGC TGGGTTTAGA AGCAGGCAGT AAGCCTGAAT TGATGGCGGT ACTCGCCATG
GCACAAAAAG CCAGCTCAGT AATCGTCTGT AATGGTTACA AAGATAAAGA ATACGTTCGT
TTAGCCTTAA TTGGTGAAAA GCTAGGCCAT AAAGTTTACA TCGTACTTGA GAAGATGTCT
GAGCTTAAAA TGGTGCTTGA AGAAGCCCGT GAGCTTGGCG TCACTCCCCG TCTTGGTTTA
CGCACCCGTC TTGCATTCCA AGGCAAAGGT AAATGGCAAG CCAGTGGCGG CGAAAAATCT
AAGTTTGGCC TTTCTGCAGC CCAAGTGCTT AAAGTAGTTG ATGAGCTGAA AGAAGCCAAC
ATGTTGGAGT CTTTACAGTT ATTGCATTTC CACTTAGGTT CTCAAATTGC CAACATTCGT
GATATTCGCC AAGGTGTGAG TGAAGCGGGC CGTTTCTATT GTGAGTTACG TCAACTGGGT
GCCAGCATTA ACTGTTTCGA TGTCGGCGGC GGCTTAGCGG TTGACTATGA TGGCACTCGC
AGTCAAAGCA ATAACTCGAT GAACTACGGT TTAACCGAGT ACGCCAATAA TATCGTTAAC
GTGTTAACGG ATTTGTGTAA CGAATACGAG CAGCCAATGC CACGTATTAT TTCTGAATCT
GGTCGTCACT TGACTGCGCA CCACGCAGTG TTAATCACTG ACGTGATTGG CACTGAAGCC
TATATGCCTG AAAATATTCA AGCACCAGCC GAAGATGCGC CGCAACTATT ACATAACATG
TGGCAGTCTT GGACAGAGAT CAGCGGTCGT CACGATCAAC GTGCAATTAT TGAAATTTAT
CACGATAGCC AAAGCGATAT CGCCGAAGCG CATTCTTTGT TTGCCGTCGG GCAATTAAGC
CTGATGGATA GAGCCTGGGC TGAGCAAACC AACTTACGTG TCTGTCATGA AGTAAAAGGT
TTGCTAAGCA ATAACAACCG TTACCACAGA CCGGTGATTG ATGAATTAAA CGAAAAATTA
GCTGACAAGC TATTCGTTAA CTTCTCATTA TTCCAGTCAT TGCCAGATGC ATGGGGTATC
GACCAAGTAT TCCCAGTATT GCCACTGACT TGCCTTGATA AAGCGCCAGA GCGCCGTGCA
GTAATGCTAG ATATCACTTG TGACTCCGAC GGTATTGTCG ATCAATACGT AGATGGTCAA
GGTATCGAGA CGACATTGCC AGTACCCGCA TGGGATCCTG CTAACCCGTA CCTGATTGGC
TTCTTCATGG TGGGTGCATA CCAAGAAATC TTGGGCGACA TGCATAACCT CTTTGGTGAC
ACTAATTCGG CTGTGGTATT TGTTGAAGAT AACGGTAAAG CACGAATTGA GTCGACGTTA
GACGGTGACA CTGTGGCTGA CGTTCTGCGT TACGTTAACT TAGATGCTGA TGAGTTTATG
CATACCTATG AAGAATTAGT TGAACAGCAC ATTGTTGAAG ACGAACGTGC TTCAATTTTA
GAAGAGTTAC AACTTGGACT TAAAGGTTAC ACTTACTTAG AAGATTTCTA A
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| Protein sequence | MNDWTIEDAR AGYNVTHWSQ GFYGIGEAGE VTVSPDPLNP SNKVALDTLA QDLVQAGIAL
PVLVRFPQIL HHRVESLCDA FNQAIQKYEY QNDYLLVYPI KVNQQKTVVE EILASQVSKE
VPQLGLEAGS KPELMAVLAM AQKASSVIVC NGYKDKEYVR LALIGEKLGH KVYIVLEKMS
ELKMVLEEAR ELGVTPRLGL RTRLAFQGKG KWQASGGEKS KFGLSAAQVL KVVDELKEAN
MLESLQLLHF HLGSQIANIR DIRQGVSEAG RFYCELRQLG ASINCFDVGG GLAVDYDGTR
SQSNNSMNYG LTEYANNIVN VLTDLCNEYE QPMPRIISES GRHLTAHHAV LITDVIGTEA
YMPENIQAPA EDAPQLLHNM WQSWTEISGR HDQRAIIEIY HDSQSDIAEA HSLFAVGQLS
LMDRAWAEQT NLRVCHEVKG LLSNNNRYHR PVIDELNEKL ADKLFVNFSL FQSLPDAWGI
DQVFPVLPLT CLDKAPERRA VMLDITCDSD GIVDQYVDGQ GIETTLPVPA WDPANPYLIG
FFMVGAYQEI LGDMHNLFGD TNSAVVFVED NGKARIESTL DGDTVADVLR YVNLDADEFM
HTYEELVEQH IVEDERASIL EELQLGLKGY TYLEDF
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