| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2016 |
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| Symbol | |
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| ID | 4018508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2392312 |
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| End bp | 2392968 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637956041 |
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| Product | rhomboid-like protein |
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| Protein accession | YP_563022 |
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| Protein GI | 91793371 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAGTC AGCATAAATC TCACCAAAAC AATCCTTTGC AGTGGCAACC CCTGTATTTA
TTTGCCACTA TTGTCACGGT TATTTCGTCG GCATTTTGGG CATTAGAATG GTTTTCAGCC
CAAGGCGCAT CCATTGCCGA TAGCTTCAGT TACTTACGCC TGAATATCAC TCAAGGCCAA
GTGTGGCGCC TCGTGACTGG AAACTTACTC CATACCAATT TATGGCATTT ATTAATGAAT
CTTGCAGGGC TGTGGGTGAT CCTCTTCCTG CATGAGATGC ACTATAAAAA AAAACCGATA
CTTATCTATG GATTATTTTT AAGCCTTTGT CTGTTCGAAG GCCTAGGTCT GTATTTCTAT
TACCCTGAAC TACTCAGCTA CGTAGGCCTC AGCGGTGTAC TCCATGGCTT ATTCAGTTTC
GGTGCCATTA TGGACATCAC TAAGGGCTAT CGTTCGGGAT ATCTGCTATT TCTAGGTGTG
CTAGCTAAGG TGTATTACGA ACAAAGCTAT GGCGCAAATA GCAGCGTGGT TGAGTTAATT
GGCGCCAGAG TGGCGACCGA GTCTCACCTT ATTGGGGTGA TAAGCGGGAT CATTTGTGGC
ATTGGCTGGC TTAGCTACCT TTATGTTCGT CAACGTATCA AACATAAATT CAGCTAG
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| Protein sequence | MASQHKSHQN NPLQWQPLYL FATIVTVISS AFWALEWFSA QGASIADSFS YLRLNITQGQ
VWRLVTGNLL HTNLWHLLMN LAGLWVILFL HEMHYKKKPI LIYGLFLSLC LFEGLGLYFY
YPELLSYVGL SGVLHGLFSF GAIMDITKGY RSGYLLFLGV LAKVYYEQSY GANSSVVELI
GARVATESHL IGVISGIICG IGWLSYLYVR QRIKHKFS
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