| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1993 |
|---|
| Symbol | |
|---|
| ID | 4018482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2357715 |
|---|
| End bp | 2358929 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637956015 |
|---|
| Product | aminotransferase AlaT |
|---|
| Protein accession | YP_562999 |
|---|
| Protein GI | 91793348 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000340923 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCTA TTATCAAATC CAATAAGCTC GATTCCGTCT GTTATGACAT CCGCGGCCCA
GTCCACAAGG AAGCCCGCCG CCTCGAAGAG GAAGGTCACC GCATCTTAAA GCTCAATATA
GGTAACCCAG CGCCCTTTGG ATTTGAAGCC CCTGAGGAAA TTGTCAGGGA CGTTATTCTC
AATTTACCCA GTGCCCAAGG CTATTGTGAG TCAAAAGGAT TATTCTCTGC CCGCAAGGCC
ATAGTGCAGC ATTATCAAGC ACAGGGGATT TTTGGGGTCG ACATCGAGGA CATCTACATA
GGCAATGGGG TGTCAGAGCT TATCATGATG GCATTACAAG GCTTGCTGAA TACCGATGAT
GAGATTTTAA TTCCCTCCCC CGATTACCCC TTGTGGACCG CGGCAGCCAA TCTTTCTGGC
GGCAAGGCGG TGCATTATCG CTGTGATGAA GAGGCCGATT GGTTCCCCGA TCTCAATGAC
ATTAAAGCCA AGATCACCCC GCGCACTCGC GGCATCGTCT TAATTAACCC CAACAATCCC
ACTGGCGCGG TTTACAGTGA AGCCTTGCTG TTAGAGGTGA TTGAATTATG TCGCCAGCAC
GACCTTATCC TGTTTGCCGA TGAGATTTAC GATAAGATTT TGTACGATGA AGCCCAGCAT
GTGCCAGCGG CGAGATTGTC TGACGATATT CTTACCGTGA CCTTCAATGG CTTGTCTAAA
GCCTACCGCG CCGCCGGTTT TAGGGTGGGC TGGATGATGC TCTCTGGTAA CTTAAAGATA
GCCAAGAGTT ATATCGAGGG CCTAGAAATG CTGTCGTCCA TGCGCTTGTG CTCCAATGTA
CCTAATCAGC ACGCCATTCA AACTGCGCTC GGTGGCTACC AGTCCATTAA TGAACTTATC
TTACCCAATG GCCGATTAAC GGTGCAGCGC GACGTGTGTT TTGATTTGCT CAATCAAATC
CCTGGGGTCA GTTGTAAGAA ACCTAAGGGC GCCTTGTATG CCTTCCCAAA GCTTGATATG
AAAAAGTTTA ACTTAAGGGA TGATGAGCGC TTAGTGCTGG ACTTACTTAA GAGCCAAAAA
ATCCTCCTCG TTCATGGCAG TGCCTTTAAC TGGCCTGAGC CGGATCACCT CAGGGTGGTC
TTCTTACCTC ATAAGGAAGA CTTAACCAAA GCCTTAACCC ATTTTGGCGA GTTTCTCGAA
GACTATCGGC AGTGA
|
|---|
| Protein sequence | MRPIIKSNKL DSVCYDIRGP VHKEARRLEE EGHRILKLNI GNPAPFGFEA PEEIVRDVIL
NLPSAQGYCE SKGLFSARKA IVQHYQAQGI FGVDIEDIYI GNGVSELIMM ALQGLLNTDD
EILIPSPDYP LWTAAANLSG GKAVHYRCDE EADWFPDLND IKAKITPRTR GIVLINPNNP
TGAVYSEALL LEVIELCRQH DLILFADEIY DKILYDEAQH VPAARLSDDI LTVTFNGLSK
AYRAAGFRVG WMMLSGNLKI AKSYIEGLEM LSSMRLCSNV PNQHAIQTAL GGYQSINELI
LPNGRLTVQR DVCFDLLNQI PGVSCKKPKG ALYAFPKLDM KKFNLRDDER LVLDLLKSQK
ILLVHGSAFN WPEPDHLRVV FLPHKEDLTK ALTHFGEFLE DYRQ
|
|---|
| |