| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1834 |
|---|
| Symbol | |
|---|
| ID | 4018317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2160146 |
|---|
| End bp | 2162407 |
|---|
| Gene Length | 2262 bp |
|---|
| Protein Length | 753 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637955851 |
|---|
| Product | ATPase AAA-2 |
|---|
| Protein accession | YP_562841 |
|---|
| Protein GI | 91793190 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00123465 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAATA AAGATCTTGA AGTCACCTTG AACCTAGCGT TTCAGCGGGC TAGAGATTCA
CGTCATGAAT ACATGACAGT AGAACATTTA TTATTGGCGT TAATCGATAA TCCATCGGCT
AATGAAGCGT TAACATCTTG TGGCGCAGAT ATCGAGCGTC TACGTGAAGA GGTCGCCAAT
TTCATCAAAC AAACCACACC GCTTATTGCT GAGGTCAGTG AAGAGCGCGA AACTCAACCC
ACCTTAGGTT TTCAACGTGT GCTGCAGCGC GCCGTGTTTC ATGTGCAGTC TTCGGGCCGA
AATGAAGTCA CTGGGGCCAA TGTGCTGGTG GCCATCTTCA GTGAGCAAGA ATCTCAAGCA
GTTTATTTAC TGCGTCGCTG CGACATTACT CGTCTCGATG TGGTTAATTT TATTTCTCAT
GGGGTGTCAA AAGATGATGA AAATCAAGGC AGCCCTGAGC AAGAGCGTAT CGAAGATCAA
TCTGAAACGG CAGAAGATCG CAGCATGTTG GCGCAATTTT GTGCCAACCT GAATCAATTA
GCCTTAGATG GCAATATTGA TCCCCTCATA GGTCGTGATG ATGAAGTTGA GCGGGCAATT
CAAACCTTGT GTCGTCGTCG CAAGAACAAT CCGCTATTAG TGGGTGAGGC TGGGGTGGGT
AAAACCGCTA TCGCCGAAGG CTTAGCTTAT CGAATCGTCA ATCAACAAGT GCCAGAGGTG
ATGGCAGAAG CCACGGTCTA CTCGTTAGAT CTAGGCTCAC TGCTCGCAGG CACTAAGTAT
CGTGGTGATT TTGAGAAACG CTTTAAGAGT CTACTTAAAG AGCTCTCAAA TGATAAACAC
GCGATTCTAT TTATCGATGA AATTCATACC ATCATAGGGG CAGGCGCCGC ATCGGGTGGG
GTGATGGATG CCTCAAACTT GCTCAAACCT TTGCTGTCTA GCGGCAATTT ACGTTGCATG
GGGTCAACCA CCTTCCAGGA ATACCAAGGG GTGTTTGAAA AGGACAGGGC ACTGGCCCGT
CGATTCCAAA AAATCGATGT GCTTGAACCT TCGGTAGCTG AAACCACTAA GATCCTCATG
GGACTTAAAT CTAAGTATGA AGCTCACCAT GGGGTGCGTT ACACCCAAGC CGCTATCAGT
AGTGCAGCAA TTTTAGCCGC AAAGCACATT AACGACCGTC ATTTGCCGGA TAAAGCCATC
GACGTTATCG ATGAAGCGGG TGCTCGTATG GTGATGATGC CCCAGAGCAA ACGCAAAAAA
ACCATTGGCC AAGCGGAAAT TGAAGCGATT ATCGCCAAAA TAGCCCGTAT CCCTGAGAAG
TCGGTATCGT CCACTGACAA GGATATGTTA CGTAACCTTG AACGCAACCT TAAGATGGTC
GTCTTTGGCC AAGACAAGGC CATTGAGACG CTTAGCGCGG CCATACGTCT ATCCCGTAGC
GGCTTGGGTT CAGATAACCA ACCTGTTGGC AGTTTCTTGT TTGCCGGTCC TACCGGCGTG
GGTAAAACCG AAGTCACCAA TCAATTAGCG GCTAGTCTTA GCCTCAAACT CATACGTTTT
GATATGTCTG AGTACATGGA GCGTCACACT GTCTCACGCT TGATTGGTGC GCCTCCAGGT
TACGTGGGTT ATGAGCAGGG CGGCTTACTG ACAGATGCAG TGATTAAAAA CCCACATTGT
GTCGTGCTAC TAGATGAAAT CGAGAAAGCT CACCCCGATG TCTACAACTT GCTGTTGCAA
GTCATGGATC ACGGCACCTT AACCGACAAC AATGGTCGTA AAGCTGACTT TAGAAACGTC
ACCTTAGTGA TGACCACGAA TGCAGGGGTT CGAGAGACCA TACGGTCATC CATTGGCTTT
AAGCAGCAAG ATCACAGTCA AGATGCGCTG TCAGAGATAA ACAAGGTCTT TTCACCTGAA
TTTAGAAACC GCTTGGATTC AATCGTCTGG TTCAATCATT TAGATATGAC GATCATCGCC
AAAGTGGTAG ACAAGTTCTT AGTGGAACTG CAAGCTCAGC TTGATGATAA AGCCGTGGTG
CTGGAAGTCA GTGATGAGGC GCGTACCTTG TTAGCCGAGA AGGGCTACGA TAAGAACATG
GGAGCCAGGC CGATGAGCCG TGTGGTGACG GATCTTATCA AACGTCCATT AGCGGATGAG
ATTTTGTTCG GCACTTTAAG TTCAGGCGGC ATCGCTCATG TGGATGTGGT TGAGGGAGAA
ATCGCTATCA GCTGTGAATG CCCAGAGAAA GTCGCTCACT AG
|
|---|
| Protein sequence | MLNKDLEVTL NLAFQRARDS RHEYMTVEHL LLALIDNPSA NEALTSCGAD IERLREEVAN
FIKQTTPLIA EVSEERETQP TLGFQRVLQR AVFHVQSSGR NEVTGANVLV AIFSEQESQA
VYLLRRCDIT RLDVVNFISH GVSKDDENQG SPEQERIEDQ SETAEDRSML AQFCANLNQL
ALDGNIDPLI GRDDEVERAI QTLCRRRKNN PLLVGEAGVG KTAIAEGLAY RIVNQQVPEV
MAEATVYSLD LGSLLAGTKY RGDFEKRFKS LLKELSNDKH AILFIDEIHT IIGAGAASGG
VMDASNLLKP LLSSGNLRCM GSTTFQEYQG VFEKDRALAR RFQKIDVLEP SVAETTKILM
GLKSKYEAHH GVRYTQAAIS SAAILAAKHI NDRHLPDKAI DVIDEAGARM VMMPQSKRKK
TIGQAEIEAI IAKIARIPEK SVSSTDKDML RNLERNLKMV VFGQDKAIET LSAAIRLSRS
GLGSDNQPVG SFLFAGPTGV GKTEVTNQLA ASLSLKLIRF DMSEYMERHT VSRLIGAPPG
YVGYEQGGLL TDAVIKNPHC VVLLDEIEKA HPDVYNLLLQ VMDHGTLTDN NGRKADFRNV
TLVMTTNAGV RETIRSSIGF KQQDHSQDAL SEINKVFSPE FRNRLDSIVW FNHLDMTIIA
KVVDKFLVEL QAQLDDKAVV LEVSDEARTL LAEKGYDKNM GARPMSRVVT DLIKRPLADE
ILFGTLSSGG IAHVDVVEGE IAISCECPEK VAH
|
|---|
| |