| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1828 |
|---|
| Symbol | mnmA |
|---|
| ID | 4018311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2153208 |
|---|
| End bp | 2154341 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637955845 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_562835 |
|---|
| Protein GI | 91793184 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.963946 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTAG GATCTATGAC ATCAATCAAA CCCATTCATA ACGGTAAAAA AGTCATTGTC
GGTATGTCCG GCGGTGTGGA CTCCTCGGTT TCAGCTTACT TGCTTATGCA GCAAGGCTAT
GAAGTTGAAG GTCTCTTTAT GAAAAACTGG GAAGAAGATG ACACCGACGA GTATTGCGCC
GCTGCTGACG ATCTAAAAGA TGCACAAGCC GTGTGTGACA AACTCGGGAT CAAGATGCAC
ACGGTGAACT TTGCCGCCGA GTATTGGGAC AATGTGTTCG AATACTTCCT CGCCGAGTAC
AAGGCCGGTC GCACTCCGAA TCCTGATATT ATGTGCAATA AAGAAATCAA ATTCAAAGCC
TTCCTAGAAT TTGCCGATGA CATACTCGAT GCCGATTACA TTGCCATGGG CCATTATGTG
CGTCGCCGTG ATAACAGTGA CGGCAGCGTG CAAATGCTTC GCGGTGTCGA TGGCAACAAA
GATCAAAGCT ATTTCCTGTA TACCTTAAGC CATGAGCAAG TGGCCAGAAG CTTGTTCCCT
GTGGGTGAGC TTGAAAAACA TGAAGTACGT GACATCGCCA AACAAATGGG TCTTATCACC
CATGACAAAA AAGACAGCAC CGGCATTTGT TTTATCGGTG AACGTAAGTT TACCGACTTC
TTAGCCACTT ACCTGCCAGC CCAGCCAGGT GACATAGAAA CCCCTGAAGG GGAAGTCATT
GGCAAACACC AAGGCTTGAT GTATCACACC TTAGGGCAAC GTAAAGGCTT AGGAATTGGC
GGTCTTAAAG ACAGCAATGA AGATCCCTGG TATGTGGTTG AAAAAGATTT ACTGCGCAAT
GTATTAATTG TGGCACAAGG TGGCAATCAC CCAAGGCTGA TGTCTCAGGG AATGACAGTC
AATCAGTTAC ATTGGGTTGA CCGTAAAGGT CCTGCCACTG ATAGCCAGCT CGTTGTAAAG
ACACGTTATC GTCAGACAGA TGTCCCCTGC CGTATCAGTT TTGATGACCC ACAGAGAATA
ACTGTCATAT TTGACTCACC TGTTGCCGCC GTGACCCCAG GTCAATCTGC GGTATTTTAT
GACGGTGATG TCTGCCTAGG TGGCGGCATC ATTGACAGTC TCATAAGAGG ATAA
|
|---|
| Protein sequence | MVLGSMTSIK PIHNGKKVIV GMSGGVDSSV SAYLLMQQGY EVEGLFMKNW EEDDTDEYCA
AADDLKDAQA VCDKLGIKMH TVNFAAEYWD NVFEYFLAEY KAGRTPNPDI MCNKEIKFKA
FLEFADDILD ADYIAMGHYV RRRDNSDGSV QMLRGVDGNK DQSYFLYTLS HEQVARSLFP
VGELEKHEVR DIAKQMGLIT HDKKDSTGIC FIGERKFTDF LATYLPAQPG DIETPEGEVI
GKHQGLMYHT LGQRKGLGIG GLKDSNEDPW YVVEKDLLRN VLIVAQGGNH PRLMSQGMTV
NQLHWVDRKG PATDSQLVVK TRYRQTDVPC RISFDDPQRI TVIFDSPVAA VTPGQSAVFY
DGDVCLGGGI IDSLIRG
|
|---|
| |