| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1778 |
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| Symbol | |
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| ID | 4018257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2101119 |
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| End bp | 2102801 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637955791 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_562785 |
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| Protein GI | 91793134 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTCAT TATCAACAAT GAAGTTTTAT TTCGGCTCTC TCTCAATGCC GATTATTTCA
ACCCTCAAAT TTTGCGTCAT TATGATGACC TTGAGCACAT TTCAAGCTTT TTCTGCTAAC
AGTCACCTCG ATAGTGGTGA TACCAAAATT GCGTCAACAA CCACAGCCAA TGTAACGCAA
TCCCAGCAAG TAATGGCACC CACTGAAATA AATAAGCTGA ATAAAAAGAT AGCAAAAGCC
GTACAGTCTT TAGTCTCGCC CTACTCTCAG CTTGCTATTG CTATATGGGA TCCTCAGCAG
CAACGAAGTT TATTTGAGTT AAATACTCAA AAATTAATGC AACCTGCCAG TGTGATGAAG
CTTTTTACCG CGGTAACCGC CATTGCAGAG CTTGGCCATG ACTACCGCTA CCGAAGCCAA
GTTTTTATCA AAGGGCCTAT CATTAACAAG GCATTAGAAG GCGATGTTTG GATTAATTTA
TCTGGCGATC CTAAGTTAAC CACCCAAGAC TTATCTCGAC TCATTGCGCA ATTTAAATAT
GCAGGCATAG AGAAGATAAA TGGCCAGGTA CAGCTGCTCA CTACAGCTAA TGAGCAAGTC
AGAGCACCAG GTTGGGTGTG GGATGATTTA GGTATTTGCT ACGCAGCGCC AGTATCACGG
CTTATTCTTG ATGGGAACTG CATCTTGGCA AAGCTTATTC CGAGTCAAAA CGGCATTAAA
GGTGAAACTC GACTCTCAAT CAGTACATCT TCACCCATTA AGGTTTTCAA TCAAGCACGT
TTCATCCCAA CAAGCAGTAA CAAGCAAAGC CGCGACCTGT GTCAATTATC CTTAGCGCGT
TTCGATAATA ATCAATACAA ATTGAGTGGC TGCTATCCCA GCGATGGTGG TATTAATCTT
GCTATCGCCG TCAATGATGT TGAACCCTAT ATGTTAGCTA AACTTGAGGC ACTTTTTAAG
CAACACCAAA TAGTGCTCAA ACATGCCATT AACTTGCTCA CTGATGATGA CTCTGCATTA
AGCGCACAAT TCAATGAGGC GTCATCCTCA AAAGATGAGC CCTCTCTTGT CTCTGATGAT
GAAGAATTAC GCCTTATAGC CAGTCACAGT TCAGAATCGC TAATGGCTAT GCTAGATACT
ATGTTAAAGG ATTCCAACAA TCTGATTGCC GATCGTGTAT TTAAAACCAT AGGGCGTTCC
TTTTATCAGA CTACTCACCC TCAGGTTTCA GATAATTTTA CACATGCGTC CAAGGCACAA
TTGGCAAGGC TTAATGAAAT GGGAATAAAG CTTGATTCCG CTAACCTAGT GGATGGCTCT
GGACTTTCCC GCTATAACGC CATTTCTGCA GCCCAGCTAA TGTCGCTGAT TAAATTAATT
TACTCTGACG AGCGATTTAC GTCCCTAGAC TCGGCATTAC CTGAGGCGGG TGTCAGTGGC
ACCTTAGCCT ACAAACGTGG TTTTCAAACG AAATTACGAG CAAAAGTTAA GGCAAAGACT
GGCACTATGC TAGGTGTCGC AAATTTTGCT GGCCGCATGC AGACAAGTCA AGGCGACTTG
TACTTTGTGA TCTTAGAAAA TGGCATCAAT CCCCACCAAC AAGCTCAGCA TCAAGTGAGC
AGTGAACTGC TTACAGCGAT AATGGCAATC TATGAGACAA ATGAGGAACT ACAAGCAGAT
TAA
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| Protein sequence | MSSLSTMKFY FGSLSMPIIS TLKFCVIMMT LSTFQAFSAN SHLDSGDTKI ASTTTANVTQ
SQQVMAPTEI NKLNKKIAKA VQSLVSPYSQ LAIAIWDPQQ QRSLFELNTQ KLMQPASVMK
LFTAVTAIAE LGHDYRYRSQ VFIKGPIINK ALEGDVWINL SGDPKLTTQD LSRLIAQFKY
AGIEKINGQV QLLTTANEQV RAPGWVWDDL GICYAAPVSR LILDGNCILA KLIPSQNGIK
GETRLSISTS SPIKVFNQAR FIPTSSNKQS RDLCQLSLAR FDNNQYKLSG CYPSDGGINL
AIAVNDVEPY MLAKLEALFK QHQIVLKHAI NLLTDDDSAL SAQFNEASSS KDEPSLVSDD
EELRLIASHS SESLMAMLDT MLKDSNNLIA DRVFKTIGRS FYQTTHPQVS DNFTHASKAQ
LARLNEMGIK LDSANLVDGS GLSRYNAISA AQLMSLIKLI YSDERFTSLD SALPEAGVSG
TLAYKRGFQT KLRAKVKAKT GTMLGVANFA GRMQTSQGDL YFVILENGIN PHQQAQHQVS
SELLTAIMAI YETNEELQAD
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