| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1768 |
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| Symbol | |
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| ID | 4018246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2089479 |
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| End bp | 2090186 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637955781 |
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| Product | hemolysin III family channel protein |
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| Protein accession | YP_562775 |
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| Protein GI | 91793124 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00000462203 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTATAG AGTTATCCGA AACTAACTCC AGTCCCAAAT GCCATACTGA AATCGAATTT
ACGCAACCAA GTAAAATGTT TGATTATTGC CGTAAGGAAG AGGCGGCGAA TGTCTACACC
CATGCTCTTG GCGTATTTTT GGGACTAATT GCACTCTACT TTATGCTGCT TAAAGGCTAT
CAGCAGCAAG TGGGCAATAT TAACTTGTTT GGTTTAGGCG TGTATGGCAC TAGCATAGTG
CTCTTGTTTC TAGCATCGAC CCTGTACCAT GCTAGCCGCA GTGAACTGTG GCGCAAGCGG
TTAAAAATTG CGGATCATTG CGCTATTTAT ACTTTGATTG CGGGTACTTA CACTCCGTTA
ATGTTATTGA CATTAAATAC CAGTAAAGCC GGTAGTGTAT TGCTCGTTAT TTGGTTAATA
GCATTAGGCG GCATTATTTT CAAAACCCTG TTCATTGGCC GCTTTAAGGC CTTTAGCGTC
ATCTTATATC TAGTCATGGG TTGGATGTGT GTCACCGTCA TGGATGATTT AGTCAGTGCG
ATGTCACCAT TGGGATTTAA GCTGTTATTG GGCGGCGGCA TACTCTATAG CCTAGGGGTT
ATTTTTTATG TGACGAAACG CATCCCTTAT AATCATGCAA TCTGGCACTT ATTCGTCCTC
GGCGGCGCCT TGGCCCATTT CCTGTGTATT TACCTAACGG CAATTTAA
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| Protein sequence | MSIELSETNS SPKCHTEIEF TQPSKMFDYC RKEEAANVYT HALGVFLGLI ALYFMLLKGY
QQQVGNINLF GLGVYGTSIV LLFLASTLYH ASRSELWRKR LKIADHCAIY TLIAGTYTPL
MLLTLNTSKA GSVLLVIWLI ALGGIIFKTL FIGRFKAFSV ILYLVMGWMC VTVMDDLVSA
MSPLGFKLLL GGGILYSLGV IFYVTKRIPY NHAIWHLFVL GGALAHFLCI YLTAI
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