| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1748 |
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| Symbol | |
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| ID | 4018226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2069128 |
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| End bp | 2070057 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637955761 |
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| Product | 23S rRNA pseudouridine synthase F |
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| Protein accession | YP_562755 |
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| Protein GI | 91793104 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.442205 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACAGACT CAGCTATTCG TCTTAATAAA TACATCAGTG AAAGTGGCAT TTGCTCAAGA
CGTGATGCCG ATCGTTATGT TGAACAAGGC AATGTGTTTA TTAACGGCAG GCGGGCTCAG
GTGGGCGATC TTGTCTCTAT CGGCGATAAA GTCAAAGTGA ATGGTCAAGA TATTGAGCCC
AGAGATGCTG AGAATCTAGT TTTTATTGCG CTTAATAAGC CTGTGGGCAT CGTCAGCACC
ACAGAAGGCA GTGAGCGGGA TAACATTGTG GATTTCGTTA ATCATTCAAG TCGTATCTTC
CCCATTGGCC GTTTAGATAA AGATTCTCAA GGGCTGATTT TTTTGACCAA CAATGGCGAT
CTGGTCAACA AAATACTTCG TGCGGGTAAT AATCACGATA AAGAATATGT GGTTACTGTG
AATAAGCCCA TTACCGATGA CTTTATCAAA GGCATGGGAG CTGGCGTGCC TATCCTTGGC
GTTGTTACCA AAAAGTGTGT CGTTGAACAA GTGTCACCCT TTGCGTTTAA AATCGTGCTA
GTGCAGGGGC TTAACCGTCA GATCCGCCGC ATGTGTGAAT ACTTTGGCTT TGAAGTGACC
AAACTTGAAC GCCAACAAAT TATGAATGTC AGCCTTAAAG GTCTGCCAAT AGGGGAATGG
CGTGATTTAG ACAAGCAAGA GTTGGATGTC TTGTTTGATA TGATCAAAGA CTCCTCTTCA
GAAGATAAAA ATGCCGCAGC AAAAAAGAAG CCTAAACCTA AGCCCAAAGT TGCATCTCTT
AGAGATAAAA TTGAAGGACC TGAGCACTTT ATGCAGCATA ACCGCAGCAC TAAACATAAA
GGGCAAGCCA AAGGCCAACC TAAAGGTCAA ACTAAAGGCC AAGGTAAGGG CAAGCCCGGC
GGCGGACGTA AACCTAAAGC ATCACGTTAG
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| Protein sequence | MTDSAIRLNK YISESGICSR RDADRYVEQG NVFINGRRAQ VGDLVSIGDK VKVNGQDIEP
RDAENLVFIA LNKPVGIVST TEGSERDNIV DFVNHSSRIF PIGRLDKDSQ GLIFLTNNGD
LVNKILRAGN NHDKEYVVTV NKPITDDFIK GMGAGVPILG VVTKKCVVEQ VSPFAFKIVL
VQGLNRQIRR MCEYFGFEVT KLERQQIMNV SLKGLPIGEW RDLDKQELDV LFDMIKDSSS
EDKNAAAKKK PKPKPKVASL RDKIEGPEHF MQHNRSTKHK GQAKGQPKGQ TKGQGKGKPG
GGRKPKASR
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